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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCGCAAATCCAGTAACCTAATTTTAAATCTATTTTACTTAATGGCGGGTTCCAATATTCCTGATATAGCTTCTGATCCTGAAAAGGGGATTCTTAAGgtaagctcccttgtgtttcaataaataggtgaaaactgttcatttgttcttataccaaggcattgtggctgtgcag

Basic information

species Glycine max
transcript GLYMA06G10090.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10090.1 (Glycine max), 5'ss of exon 16
lower sequence: AT1G60490.1 (Arabidopsis thaliana), 5'ss of exon 16
TCTTCGCAAATCCAGTAACCTAATTTTAAATCTATTTTACTTAATGGCGGGTTCCAATATTCCTGATATAGCTTCTGATCCTGAAAAGGGGATTCTTAAGgtaagctcccttgtgtttcaa-taaataggtgaaaactgttcatttgttcttataccaaggcattgtggctgtgcag-----------------------------------
||| || ||||| || ||||| ||||| ||||| ||| |  | ||||||||||| | |||||| ||||||||||| || || |||||||| ||||| || ||||| | | ||   |||||  |||  |  ||||| |      | |  || ||  |  |     | | ||| |||                                     
TCTCCGGAAATCGAGCAACCTTATTTTGAATCTGTTTCATCTCATGGCGGGTTCAACTATTCCCGATATAGCTTCAGACCCAGAAAAGGGCATTCTCAAAgtaagtttctttcactttcacctaaccaaatgaaacccaccattcttctcctaaccggattggcttttgct-tgctccttattattctcgtaaatggtgtctttttattcag

upper sequence: GLYMA06G10090.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 16
TCTTCGCAAATCCAGTAACCTAATTTTAAATCTATTTTACTTAATGGCGGGTTCCAATATTCCTGATATAGCTTCTGATCCTGAAAAGGGGATTCTTAAGgtaagctccct------tgtgtt-tcaataaataggtg-aaaactgttcatttgttcttat----accaaggcattgtggctgtgcag
 || |||||||| |||||||| ||||| ||||| ||  |  | ||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||| | || | |      |  ||| ||  |  | | ||  |||| ||||   |  ||||| |    ||   |||    | ||| || ||
CCTCCGCAAATCTAGTAACCTCATTTTGAATCTGTTCCATCTGATGGCGGGTTCCAATATTCCTGACATAGCTTCTGATCCTGAGAAAGGCATTCTTAAGgtgaccttcttctatcgtacgttctctgtccacaagtataaaattgttttctgtttcttgttatgactttggctgctttgct-tgtag