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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATTGAAGTTGCAACGCTTACGTGAGTTTGTTCGATCAGAATATGACCATGCTTGCCTTCGTTCTTGCCGATCACGGGCCCTCTATGAAGGGATCAAGgtttgacttgttcttgtacttgttgaacctgtgaacattgaaatatttgacattcaattgattttcttgtgttggtttaggtgcagctcttgatcttgttctaatttgcattcatcttgttctaaaataaaatag

Basic information

species Glycine max
transcript GLYMA06G09360.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09360.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os01g09246.1 (Oryza sativa), 5'ss of exon 16
GAGATTGAAGTTGCAACGCTTACGTGAGTTTGTTCGATCAGAATATGACCATGCTTGCCTTCGTTCTTGCCGATCACGGGCCCTCTATGAAGGGATCAAGgtttgacttgttcttgtacttgttgaacctgtgaacattgaaatatttgacattcaattgattttcttgtgttggtttaggtgcagctcttgatcttgttctaatttgcattcatcttgttctaaaataaaatag
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GAGAAAGAAATTGCAAAGACTTCGTGAATTTGTTCGCTCTGAGTATGACCATTCGTGCTTACGTTCTTGCCGTTCACGTGCGCTTTATGAAGGGCTCAAGgtttgtagttctgttttaactattt--ctagattgctaccacatgcttatctctgaggtcatccttcc---ctagcctaagaactga----aatcctttgatgtttcac--------------------------

upper sequence: GLYMA06G09360.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM5G820781_T01 (Zea mays), 5'ss of exon 1
GAGATTGAAGTTGCAACGCTTACGTGAGTTTGTTCGATCAGAATATGACCATGCTTGCCTTCGTTCTTGCCGATCACGGGCCCTCTATGAAGGGATCAAGgtttgacttgttcttgtacttgttgaacctgtgaacattgaaatatttgacattcaattgattttcttgtgttggtttaggtgcagctcttgatcttgttctaatttgcattcatcttgttctaaaataaaatag
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GAGAAAGAAATTACAGAGACTTCGTGAATTTGTTCGCTCTGAATATGATCATTCATGCTTACGGTCTTGCCGTTCACGTGCACTCTATGAAGGCCTCAAGgtt-gacttggtttctca--------------gaaaattcaaatatctttaaagctcttggtcttgct-cataaattttaa-acacttcaagctctta----aagttggaaccttacggtg--------------