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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCTgtaagcaataagcctcgtatatcaatttgtaataaggaattttatattatgttaagctgatggattttccaactgtcatgtatcag

Basic information

species Glycine max
transcript GLYMA06G05900.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G05900.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 15
AAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCTgtaagcaataagcctcgtatatcaatttgtaataaggaattttatattatgttaagctgatggattttccaactgtcatgtatcag
|||||| || |||||| | ||||| || ||  | |||||||||||||| |  |||| |||||||||||||||||||||| |||  | |    || | ||| | |     ||| ||     |  | | | ||||   |   |||         |  |||
AAATGTTGCTAACAACCATCTTGAAGGGCCTATACCTGATAATCTTAGTTCATGTACAAACCTCAACAGCCTgtaagcattaaatccc----attactttctta---aaaatcttcagcaacttgatggtgatcattgacccattgaattgatggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207823198|gb|GD794923.1|GD794923
EST:     GAGGGTCCAGTTCCTGATAATCTTAGCTCATGTAAAAACCTCAACAGCCT                         CAATGTGCATGGGAATAAG
genomic: GAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCTgtaagcaata ... catgtatcagCAATGTGCATGGGAATAAG
EST: gi|193532525|gb|FK489727.1|FK489727
EST:     GAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCT                         CAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAG
genomic: GAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCTgtaagcaata ... catgtatcagCAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAG
EST: gi|193325139|gb|FK290619.1|FK290619
EST:     GAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCT                         CAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAG
genomic: GAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCTgtaagcaata ... catgtatcagCAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAG
EST: gi|192296635|gb|FG991203.1|FG991203
EST:     GAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCT                         CAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAG
genomic: GAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCTgtaagcaata ... catgtatcagCAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAG
EST: gi|193451692|gb|FK419848.1|FK419848
EST:     GAGGGTCCAGTTCTTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCT                         CAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAG
genomic: GAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCTgtaagcaata ... catgtatcagCAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAG
EST: gi|193608922|gb|FK566084.1|FK566084
EST:     GAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCT                         CAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAG
genomic: GAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCTgtaagcaata ... catgtatcagCAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAG
EST: gi|208278224|gb|GE075721.1|GE075721
EST:     GAGGGTCCAGTTCCTGATAATCTTAGCTCATGTAAAAACCTCAACAGCCT                         CAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAG
genomic: GAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCTgtaagcaata ... catgtatcagCAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAG