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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGAAGGGGAGACAGTTCGAGTAATGTATGAGAAATGGTTTGTGGAATATAAAGTTGATGTCGTCTTTGCTGGTCATGTTCATGCTTATGAACGATCTgtgagttctaaattccttattatccttacactacaattgttatataccaaggacgagtattcattgcatctacaggatctttgtgcgttaatagtggtgt...

Basic information

species Glycine max
transcript GLYMA06G03100.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G03100.3 (Glycine max), 5'ss of exon 7
lower sequence: AT2G27190.1 (Arabidopsis thaliana), 5'ss of exon 5
TATGGAAGGGGAGACAGTTCGAGTAATGTATGAGAAATGGTTTGTGGAATATAAAGTTGATGTCGTCTTTGCTGGTCATGTTCATGCTTATGAACGATCTgtgagttctaaattccttattatccttacactacaattgttatataccaaggacgagtattcattg-catctacaggatctttgtgcgttaatagtggtgt
 |||||||| || ||| |  |||| ||||| ||  ||||||||||  |||| || |||||||| || ||||| |||||||||||||| |||||  |||| ||   ||| || || ||| |   ||  | | ||   ||| ||| || | |     |   ||| ||| |  | |   |||| |      || |    |    
CATGGAAGGTGAAACATTGAGAGTCATGTACGAACAATGGTTTGTCAAATACAAGGTTGATGTTGTGTTTGCAGGTCATGTTCATGCCTATGAGAGATCGgtatattc-aatttacttgtc--ccgaataata---ttgatatttatcta-----aaccttccttgtcccccaattgatcctaaaatattgacgcag----

upper sequence: GLYMA06G03100.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g13340.t01 (Vitis vinifera), 5'ss of exon 6
TATGGAAGGGGAGACAGTTCGAGTAATGTATGAGAAATGGTTTGTGGAATATAAAGTTGATGTCGTCTTTGCTGGTCATGTTCATGCTTATGAACGATCTgtgagttctaaattccttattatccttacactacaattgttatataccaaggacgagtattcattgcatctacaggatctttgtgcgttaatag-tggtgt-------
|||||||||||| ||  |  |||| |||||||||  ||||||||||||||| ||| ||||||| ||||||||||||||||||||||| || |||||||| || |||    | |  |||   |       ||||   |||||  || | ||| | |||| |   | |    || |  || ||||  | |||||   | || |       
TATGGAAGGGGAAACCATGAGAGTGATGTATGAGGCATGGTTTGTGGAATACAAAATTGATGTTGTCTTTGCTGGTCATGTTCATGCCTACGAACGATCGgtaagtgtgtattctcttggaa-------actaactttgttggattcaaagcaagagtttctttggttaatataaaat-tttgaaccttaatctctagtttctctaat

upper sequence: GLYMA06G03100.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g13330.t01 (Vitis vinifera), 5'ss of exon 6
TATGGAAGGGGAGACAGTTCGAGTAATGTATGAGAAATGGTTTGTGGAATATAAAGTTGATGTCGTCTTTGCTGGTCATGTTCATGCTTATGAACGATCTgtgagttctaaattccttattatccttacactacaattgttatataccaaggacgagta-ttcattgcatctacaggatctttgtgcgttaa----tagtggtgt---
||||||||| || |   |  | || || ||||||  |||||||||||| || ||||||||||| || ||||||||||| |||||||| |||||||||||||| |||    |||||        |  || | |||| | |||   |   ||| | ||||  || | | ||| || |   ||| |     ||||    || |||| |   
TATGGAAGGAGAAAGCATGAGGGTTATATATGAGCCATGGTTTGTGGAGTACAAAGTTGATGTTGTTTTTGCTGGTCACGTTCATGCCTATGAACGATCTgtaagtatgcaattctc------ctctaaattaca-tcgttgagtttgaagcaagagttctttagttcatgtagaat-tctgtactttttaaatcttattggtttctc