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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGATTCACCTGGACAGACTTTTGTGGCATTTGAGAAGCCAGAGGGAGTGCCAACAGTTGGAAAATTTTCTAACATTCTGAAATTTATTGTCAAAGAGgtattatcctctcttttttttttctgaacctttctggttttttattatttcatgtcatgattatgtttatattataattcaagcgtgaagcttgtttttatatttttcatttagggaatttgtggaaaataacctataatatttttgtagcaaactcatctctagattaactggatcttcttcag

Basic information

species Glycine max
transcript GLYMA06G01520.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01520.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 16
TTATGATTCACCTGGACAGACTTTTGTGGCATTTGAGAAGCCAGAGGGAGTGCCAACAGTTGGAAAATTTTCTAACATTCTGAAATTTATTGTCAAAGAGgtattat-cctctcttttttttttctgaacctttctggttttttattatttcatgtcatgattatgtttatattataattcaagcgtgaagcttgtttttatatttttcatttagggaatttgtggaaaataacctataatatttttgtagcaaactcatctctagattaactggatcttcttcag
|||||||||||| ||||| || ||||||||||||||||||||||| ||||| ||  ||||||||||||| || || ||  |||| || ||||| |||||||||  ||  |||||   || | |     |  |   |||   | | |   |||     ||   ||| || | |  |  | ||     ||||  || | | |  |||                                                                                 
TTATGATTCACCAGGACAAACATTTGTGGCATTTGAGAAGCCAGATGGAGTCCCTGCAGTTGGAAAATTCTCAAATATGTTGAAGTTCATTGTTAAAGAGgtacgatatctctccccttatctctgtcagatgcatggcactctttc--ttctccatatttctatattcagaccaagactcc----tgaaagttatatatgaattg--------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308895|gb|FK002119.1|FK002119
EST:     GAAATTTATTGTCAAAGAG                         GTTGACCCAACCACTGGTGAGGCTGAAGATGATGGTGTCGAAGATGAATAC
genomic: GAAATTTATTGTCAAAGAGgtattatcct ... tcttcttcagGTTGACCCAACCACTGGTGAGGCTGAAGATGATGGTGTCGAAGATGAATAC
EST: gi|26268306|gb|CA819369.1|CA819369
EST:     TGCCAACAGTTGGAAAATTTTCTAACATTCTGAAATTTATTGTCAAAGAG                         GTTGACCCAACCACTGGTGAGGCTGAAGATGATGGTGTCGAAGATGAATAC
genomic: TGCCAACAGTTGGAAAATTTTCTAACATTCTGAAATTTATTGTCAAAGAGgtattatcct ... tcttcttcagGTTGACCCAACCACTGGTGAGGCTGAAGATGATGGTGTCGAAGATGAATAC
EST: gi|58024186|gb|CX710927.1|CX710927
EST:     TGCCAACAGTTGGAAAATTTTTTAACATTCTGAAATTTATTGTCAAAGAG                         GTTGACCCAACCACTGGTGAGGCTGAAGATGATGGTGTCGAAGATGAATAC
genomic: TGCCAACAGTTGGAAAATTTTCTAACATTCTGAAATTTATTGTCAAAGAGgtattatcct ... tcttcttcagGTTGACCCAACCACTGGTGAGGCTGAAGATGATGGTGTCGAAGATGAATAC