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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGGAGGGAAAGCGAAAGGGCAGGGTACTGGGACAGTGCTTGCGGTAACTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAGgttttaattgctattcacccctttgcttgaattgcttgcaaaggcatatacttttatatacattcaatgatacctaataaacaaacttctctgattttgtttcctttgtgaaaatttccag

Basic information

species Glycine max
transcript GLYMA05G33320.1
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193448221|gb|FK416404.1|FK416404
EST:     CTCTAGTAGCTGTGGATTCGGAGATCGGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAG
genomic: CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTA-GAAAAAAGGAATAGGTGGGACGGAAAAGAAAG
EST: gi|193617437|gb|FK566605.1|FK566605
EST:     CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAAGAAAAAAGGA-TAGGTGGGACGGAAAAGAAAG
genomic: CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTA-GAAAAAAGGAATAGGTGGGACGGAAAAGAAAG
EST: gi|19452967|gb|BM954377.1|BM954377
EST:     CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGA
genomic: CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGA
EST: gi|193670068|gb|FK609406.1|FK609406
EST:     CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGA
genomic: CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGA
EST: gi|17400421|gb|BM177203.1|BM177203
EST:     CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGA
genomic: CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGA
EST: gi|208301907|gb|GE099473.1|GE099473
EST:     CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGG
genomic: CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGG
EST: gi|208070857|gb|GD870162.1|GD870162
EST:     CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGA
genomic: CTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACGGAAAAGAAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCTGGAGGGAAAGCGAAAGGGCAGGGTACTGGGACAGTGCTTGCGGTAACTCTAGTAGCTGTGGATTCGGAGATCAGTGTTAATGCTGCCATGCTACAGgttttaattgctattcacccctttgcttgaattgcttgcaaaggcatatacttttatatacattcaatgatacctaataaacaaacttctctgattttgtttcctttgtgaaaatttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC