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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGgtgaactcagttcttatctttcgtttcttaattcaaattgtatgtgtcaactcctaatatttcgatttcaaaataatgtgttcctgctactctgatggct...

Basic information

species Glycine max
transcript GLYMA05G27240.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27240.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 16
ATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGgtgaactcagttc--ttatctttcgtttcttaattcaaattgtatgtgtcaactcctaatatttcgatttcaaaataatgtgttcctgctactctgatggct----
 ||||||||||||||||  ||||||||||||| || ||||| ||||||||||| ||  | |||||||||||||| || ||||| ||||   |||  ||     | | || | | ||    ||  | |    | |||| |   | |   ||| ||  | | |   ||    | |  | |||||     
GTTGATGCTGCTATTGTCCGGATAATGAAGACGAGGAAAGTTCTTAGTCACACACTATTGATTACTGAACTCTTTCAGCAGgt-aactggattccattggtggttgattttcatttt---tttgaggaaaaacctcccagggtgttttttttaaggtgagga--tcacattgcgatcatggcacacc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16344341|gb|BI969936.1|BI969936
EST:     CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAG                         CTGAAATTCCCAATAAAACCAGCTGATTTGNNNNNNNGGATTGAAAGCCTC
genomic: CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGgtgaactcag ... ttttgtccagCTGAAATTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTC
EST: gi|23733442|gb|BU764920.1|BU764920
EST:     CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAG                         CTGAAATTCCCAATAAAACCAGCTGATTTGNNNNNNNGGATTGAAAGCCTC
genomic: CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGgtgaactcag ... ttttgtccagCTGAAATTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTC
EST: gi|12773136|gb|BG238063.1|BG238063
EST:     CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAG                         CTGAAATTCCCAATAAAACCAGCTGATTTGNNNNNNNGGATTGAAAGCCTC
genomic: CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGgtgaactcag ... ttttgtccagCTGAAATTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTC
EST: gi|31471408|gb|CD413436.1|CD413436
EST:     CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAG                         CTGAAATTCCCAATAAAACCAGCTGATTTGNNNNNNNGGATTGAAAGCCTC
genomic: CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGgtgaactcag ... ttttgtccagCTGAAATTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTC
EST: gi|27809423|gb|CB063845.1|CB063845
EST:     CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAG                         CTGAAATTCCCAATAAAACCAGCTGATTTGNNNNNNNGGATTGAAAGCCTC
genomic: CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGgtgaactcag ... ttttgtccagCTGAAATTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTC
EST: gi|209698239|gb|BW667542.1|BW667542
EST:     CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAG                         CTGAAATTCCCAATAAAACCAGCTGATTTGNNNNNNNGGATTGAAAGCCTC
genomic: CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGgtgaactcag ... ttttgtccagCTGAAATTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTC
EST: gi|7690871|gb|AW759008.1|AW759008
EST:     CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAG                         CTGAAATTCCCAATAAAACCAGCTGATTTGNNNNNNNGGATTGAAAGCCTC
genomic: CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGgtgaactcag ... ttttgtccagCTGAAATTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTC
EST: gi|31305219|gb|CD390422.1|CD390422
EST:     CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAG                         CTGAAATTCCCAATAAAACCAGCTGATTTGNNNNNNNGGATTGAAAGCCTC
genomic: CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGgtgaactcag ... ttttgtccagCTGAAATTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTC
EST: gi|209705497|gb|BW668075.1|BW668075
EST:     CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAG                         CTGAAATTCCCAATAAAACCAGCTGATTTGNNNNNNNGGATTGAAAGCCTC
genomic: CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGgtgaactcag ... ttttgtccagCTGAAATTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTC
EST: gi|7686211|gb|AW756922.1|AW756922
EST:     CTAGAAAAGTGCTTACTCACACCCTTCTTATTACTGAACTCTTCCAACAG                         CTGAAATTCCCAATAAAACCAGCTGATTTGAAAAAGATGATTGAAAGCCTC
genomic: CTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGgtgaactcag ... ttttgtccagCTGAAATTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTC