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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACAATCGGAGGCTGCTGCATAATTTTATTACTGGTGTTACCCTTTGCATTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACGgtaagcctatgtaaagggatatttctttgataatgtctgggtgctcaggtgcctgttacatgttgctaaaactttactaatgaaattttctaatgttttgtttaaagcaagagggtggtttggggggatcaaagatgccttatcattttcttaaattttataataatcgaaaatttctttgatactgatag

Basic information

species Glycine max
transcript GLYMA05G25780.1
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332806|gb|FK026807.1|FK026807
EST:     TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACG                         GTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
genomic: TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACGgtaagcctat ... atactgatagGTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
EST: gi|254338250|gb|GR849775.1|GR849775
EST:     TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACG                         GTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
genomic: TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACGgtaagcctat ... atactgatagGTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
EST: gi|208334582|gb|GE131575.1|GE131575
EST:     TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACG                         GTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
genomic: TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACGgtaagcctat ... atactgatagGTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
EST: gi|58014756|gb|CX701498.1|CX701498
EST:     TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACG                         GTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
genomic: TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACGgtaagcctat ... atactgatagGTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
EST: gi|193565843|gb|FK526348.1|FK526348
EST:     TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACG                         GTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGA
genomic: TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACGgtaagcctat ... atactgatagGTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGA
EST: gi|17519629|gb|BM188671.1|BM188671
EST:     TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACG                         GTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
genomic: TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACGgtaagcctat ... atactgatagGTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
EST: gi|209704194|gb|BW664812.1|BW664812
EST:     TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACG                         GTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
genomic: TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACGgtaagcctat ... atactgatagGTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
EST: gi|192300083|gb|FG991873.1|FG991873
EST:     TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACG                         GTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
genomic: TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACGgtaagcctat ... atactgatagGTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
EST: gi|20812474|gb|BQ296952.1|BQ296952
EST:     TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACG                         GTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
genomic: TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACGgtaagcctat ... atactgatagGTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
EST: gi|31463811|gb|CD405839.1|CD405839
EST:     TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACG                         GTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
genomic: TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACGgtaagcctat ... atactgatagGTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
EST: gi|192332805|gb|FK026806.1|FK026806
EST:     TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACG                         GTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
genomic: TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACGgtaagcctat ... atactgatagGTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
EST: gi|26057405|gb|CA800319.1|CA800319
EST:     TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACG                         GTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA
genomic: TTTCTCTGTATTGCATTGCACTTATTCTGCTTCTGATTCCTCATTCAACGgtaagcctat ... atactgatagGTTTGAAATTCAAGATACCAAAGAGAGATTACAGAGACAGTACCCTTTGAA