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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATACAAGTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATATATCCTGAGAAATTTGAGGGTGAAAAGGGTCTGAATTTAATGAAGgtgtggtttctttagacttggtgtcaactattgcctcttgctgttgacttaatatgtcaaataatactgttatcaatgatggtgctatgcaatattcttgtaacatgtaacctttcaaatacttttcag

Basic information

species Glycine max
transcript GLYMA05G03970.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G03970.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv13s0019g05000.t01 (Vitis vinifera), 5'ss of exon 15
GATACAAGTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATATATCCTGAGAAATTTGAGGGTGAAAAGGGTCTGAATTTAATGAAGgtgtggtttctttagacttggtgtcaactattgcctcttgctgttgacttaatatgtcaaataatactgttatcaatgatggtgctatgcaatattcttgtaacatgtaacctttcaaatacttttcag
||| | |  |||||||||||| |||| || || ||||||  |||  |||| ||||||||||| ||||||||||| || | |   || || |||||||| || ||   | |   ||    ||   | ||   | || |     | ||   || ||   |    | ||| | ||     ||   |   ||| |   | |||     |||                  
GATGCCACCCGTGAAAATAAGCTGCGTTTATTGATGATTTATGCAGCCATTTATCCTGAGAAGTTTGAGGGTGACAAAGCTTCCAAGTTGATGAAGgtatgtttctgtcaatatt----tccttttttattttttccaacataattgcaatctct--tgtccccgttttgaa-----gtttcagtgaatttatgtttaatcatcaac------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23729024|gb|BU762588.1|BU762588
EST:     CATATATCCTGAGAAATTTGAGG-TCGATAAGGGTCTGAATTTAATGAAG                         GTAGCAAAGTTGACAGATGAGGATACAATTGCCATAAATAATTTGAGAATG
genomic: CATATATCCTGAGAAATTTGAGGGT-GAAAAGGGTCTGAATTTAATGAAGgtgtggtttc ... tacttttcagGTAGCAAAGTTGACAGATGAGGATACAATTGCCATAAATAATTTGAGAATG
EST: gi|19347362|gb|BM892242.1|BM892242
EST:     CCATATATCCTGAGAAATTTGAGGGTGAAAAGGGTCTGAATTTAATGAAG                         GTAGCAAAGTTGACAGATGAGGATACAATTGCCATAAATAATTTGAGAATG
genomic: CCATATATCCTGAGAAATTTGAGGGTGAAAAGGGTCTGAATTTAATGAAGgtgtggtttc ... tacttttcagGTAGCAAAGTTGACAGATGAGGATACAATTGCCATAAATAATTTGAGAATG