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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCTTATTGTGCTTACCACAGgtatgcaatcctcaattatgactaacaaaatgattaaccatcctcttttgcccatttctaccattttctttgtagatttttctttttccccaacaattatctttttgtaattgcaaaaatataggtttgtcttaatttctccttaatctaaatcttattttcagccttccatcttaatcacatctattgttttttgcag

Basic information

species Glycine max
transcript GLYMA04G41500.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 16
lower sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 15
TTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCTTATTGTGCTTACCACAGgtatgcaatcctcaattatgactaacaaaatgattaaccatcctcttttgcccatttctaccattttctttgtagatttttctttttccccaacaattatctttttgtaattgcaaaaatataggtttgtcttaatttctccttaatctaaatcttattttcagccttccatcttaatcacatctattgttttttgcag
||||| || ||||||||||||||  |||||| |||||| ||||| || ||||||||||| |||||||      ||    |      || | | |||  ||     | |  | |||    | |     ||    ||| |  ||| || ||  |    |                                                                                                           
TTGCACTGCTTGGAGAAAAATGGTCAGCAGATAACAAAGATGGTGTCCTATTGTGCTTATCACAGgtgaaatttctcagaactctgcttaaagaatttttggtgttacgatgttggtt-tatgatttataagttttatctattgtttttggtgtgtag----------------------------------------------------------------------------------------------------------

upper sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 16
TTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCTTATTGTGCTTACCACAGgtatgcaatcctcaattatgactaacaaaatgattaaccatcctcttttgcccatttctaccattttctttgtagatttttctttttccccaacaattatctttttgtaattgcaaaaatataggtttgtcttaatttctccttaatctaaatcttattttcagccttccatcttaatcacatctattgttttttgcag
|||||  | |||| |||||||||||  |||| |||||| ||||| || ||||||||||| |||||||||  |||||| |  | ||   |   | |  ||  |      |||    | ||    | |   |     ||      |  | | ||       |    |   | ||    | |||   ||     |||| ||  |  |  | ||||| | || || | ||||   ||   | |      ||                 
TTGCACAGCTTGGTGAAAAATGGCAGACAGATAACAAAGATGGTTTCATATTGTGCTTATCACAGgtattgaatccttacatgtg-tgagtgagaaaat--atagctttctcacactcacacgtgcacatgcacatgacaccctaacatgttggatgtgatgggttcatgtgctgattcaactctac---cttgtgtttttcacaacctaatcaagattttctgttcatggttttgtttctggtgcag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406528|gb|EV276343.1|EV276343
EST:     AAAAATGGCAAGCAGACAACAAAAATGGTCTCTTATTGTGCTTACCACAG                         GGCTCCCAATCCAGATACAGTTTTGATTATGCAAACCCCTCTTGGGGTCAT
genomic: AAAAATGGCAAGCAGACAACAAAAATGGTCTCTTATTGTGCTTACCACAGgtatgcaatc ... ttttttgcagGGCTCCCAATCCAGATACAGTTTTGATTATGCAAACCCCTCTTGGGGTCAT