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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTATGGAACTGGCACAAGAAAGAAGAGGGCAGTTCAGAGAAATGAAATTTATTGCTGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAGgtaatctcttgcattagttcttgtctattgaccctaaaaactcgtgcttctgtttaactagttttggctctcaagtatctgaatctttttgaatgtcaattttgtag

Basic information

species Glycine max
transcript GLYMA04G38360.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38360.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 16
ACTTATGGAACTGGCACAAGAAAGAAGAGGGCAGTTCAGAGAAATGAAATTTATTGCTGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAGgtaatctcttgcattagttcttgtctattgaccctaaaaactcgtgcttctgtttaactagttt-tggctctcaagtatctgaatctttttgaatgtcaattttgtag------------------------------
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TCTCATGGAATTGGCTCAAGACCGTAGAGGAGAGTTCAAAGAAATGAAATTTATCACTGAGAATAGAGCATCAATTACCTATGAATTACCCTTAGCAGAGgtaccttttcctattcaatc--atccacttgctttgataaactgaaatgcagtt-gactagtaaattaatattgggtctccctaattttttggctgttgatagattgaattttctctggttttgaaattcattcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814694|gb|BI786969.1|BI786969
EST:     TTATTGCTGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAG                         ATGGTTGGTGATTTCTTTGACCAGTTGAAGTCGAGAAGTAAGGGTTATGCT
genomic: TTATTGCTGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAGgtaatctctt ... aattttgtagATGGTTGGTGATTTCTTTGACCAGTTGAAGTCGAGAAGTAAGGGTTATGCT