1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TTCCGGAGGAAAAGTGAAAGGGCAGGGAACTGGGACAGTCCTTGCTGTAACTCTTGTTGCCGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattactgttcactcttgcttgaagtgtttgcaaagtcttatggtttgatcccttgtgctcatacagaaataataccccacttttctgattattttttttttggaatttccag
species | Glycine max |
transcript | GLYMA04G38010.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CTCTTGTTGCCGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAG GAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGAEST: gi|298168100|gb|HO013363.1|HO013363
genomic: CTCTTGTTGCCGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattac ... gaatttccagGAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
EST: CTCTTGTTGCGGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAG GAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGAEST: gi|208291311|gb|GE094561.1|GE094561
genomic: CTCTTGTTGCCGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattac ... gaatttccagGAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
EST: CTCTTGTTGCCGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAG GAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGAEST: gi|207822358|gb|GD796155.1|GD796155
genomic: CTCTTGTTGCCGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattac ... gaatttccagGAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGA
EST: CTCTTGTTGCCGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAG GAAGGGCTTGACTAGGAACAGAAAAAAGAAACAGG
genomic: CTCTTGTTGCCGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattac ... gaatttccagGAAGGGCTTG-CTAGGA-CAGAAAAAAGAAACAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCGGAGGAAAAGTGAAAGGGCAGGGAACTGGGACAGTCCTTGCTGTAACTCTTGTTGCCGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGgttatattactgttcactcttgcttgaagtgtttgcaaagtcttatggtttgatcccttgtgctcatacagaaataataccccacttttctgattattttttttttggaatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC