1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TGATAGCCATACGATTGTGAAGGAGAATGTAGCTAGTAAACCACATACTGAACCAGTTCACAGTGTGGAGCAATCATTCTCTATGATCCATTTGAGAGAGgtatatatgtgtgacctgttttttatcatcagctttatcaatatgttccttaggtgtaaatttcatattgtgctttggtttttgtag
species | Glycine max |
transcript | GLYMA04G16340.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: AACCAGTTCACAGTGTGGAGCAATCATTCTCTATGATCCATTTGAGAGAG CCACCTCCTGTCTTGAGGTCATCAGAGAGCTATTCAGAGACAGAAGCTATTEST: gi|298170905|gb|HO015881.1|HO015881
genomic: AACCAGTTCACAGTGTGGAGCAATCATTCTCTATGATCCATTTGAGAGAGgtatatatgt ... gtttttgtagCCACCTCCTGTCTTGAGGTCATCAGAGAGCTATTCAGAGACAGAAGCTATT
EST: AACCAGTTCACAGTGTGGAGCAATCATTCTCTATGATCCATTTGAGAGAG CCACCTCCTGTCTTGAGGTCATCAGAGAGCTATTCAGAGACAGAAGCTATTEST: gi|57574359|gb|CX547334.1|CX547334
genomic: AACCAGTTCACAGTGTGGAGCAATCATTCTCTATGATCCATTTGAGAGAGgtatatatgt ... gtttttgtagCCACCTCCTGTCTTGAGGTCATCAGAGAGCTATTCAGAGACAGAAGCTATT
EST: ACCCAGTTCACAGTGTGGAGCAATCATTCTCTATGATCCATTTGAGAGAG CCACTTCCTGTCTTGAGGTCATCAGAGAGCTATTCAGAGACAGAAGCTATTEST: gi|193616942|gb|FK570618.1|FK570618
genomic: AACCAGTTCACAGTGTGGAGCAATCATTCTCTATGATCCATTTGAGAGAGgtatatatgt ... gtttttgtagCCACCTCCTGTCTTGAGGTCATCAGAGAGCTATTCAGAGACAGAAGCTATT
EST: TTCACAGTGTGGAGCAATCATTCTCTATGATCCATTTGAGAGAG CCACCTCCTGTCTTGAGGTCATCAGAGAGCTATTCAGAGACAGAAGCTATT
genomic: TTCACAGTGTGGAGCAATCATTCTCTATGATCCATTTGAGAGAGgtatatatgt ... gtttttgtagCCACCTCCTGTCTTGAGGTCATCAGAGAGCTATTCAGAGACAGAAGCTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATAGCCATACGATTGTGAAGGAGAATGTAGCTAGTAAACCACATACTGAACCAGTTCACAGTGTGGAGCAATCATTCTCTATGATCCATTTGAGAGAGgtatatatgtgtgacctgttttttatcatcagctttatcaatatgttccttaggtgtaaatttcatattgtgctttggtttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA