1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
AAAGAATTTTGTGGAACAAGGTTCTCTTTCAGAATTGATAGTTGCATTCTCTAGAGAGGGGGCTGAAAAGGAATATGTTCAACACAAGATGATGGATCAAgtaagtgcgaatagcagcctagtagggatcaaatgtaaccggataaattatttcctgcattaatttttttttatgtgcag
species | Glycine max |
transcript | GLYMA04G10200.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CTAGAGAGGGGGCTGAAAAGGAATATGTTCAACACAAGATGATGGATCAA GCTGCACATCTGTGGAGTTTGATTTCTCAAGGAGGTTATCTTTACGTCTGTEST: gi|192296494|gb|FG989110.1|FG989110
genomic: CTAGAGAGGGGGCTGAAAAGGAATATGTTCAACACAAGATGATGGATCAAgtaagtgcga ... ttatgtgcagGCTGCACATCTGTGGAGTTTGATTTCTCAAGGAGGTTATCTTTACGTCTGT
EST: CTAGAGAGGGGGCTGAAAAGGAATATGTTCAACACAAGATGATGGATCAA GCTGCACATCTGTGGAGTTTGATTTCTCAAGGAGGTTATCTTTACGTCTGTEST: gi|208323072|gb|GE123043.1|GE123043
genomic: CTAGAGAGGGGGCTGAAAAGGAATATGTTCAACACAAGATGATGGATCAAgtaagtgcga ... ttatgtgcagGCTGCACATCTGTGGAGTTTGATTTCTCAAGGAGGTTATCTTTACGTCTGT
EST: GAGGGGGCTGAAAAGGAATATGTTACAAACAACAAAGAATGATGGATCAA GCTGCACATCTGTGGAGTTTGATTTCTCAAGGAGGTTATCTTTACGTCTGT
genomic: GAGGGGGCTGAAAAGGAATATGTT-CAA-CA-CAA-GA-TGATGGATCAAgtaagtgcga ... ttatgtgcagGCTGCACATCTGTGGAGTTTGATTTCTCAAGGAGGTTATCTTTACGTCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGAATTTTGTGGAACAAGGTTCTCTTTCAGAATTGATAGTTGCATTCTCTAGAGAGGGGGCTGAAAAGGAATATGTTCAACACAAGATGATGGATCAAgtaagtgcgaatagcagcctagtagggatcaaatgtaaccggataaattatttcctgcattaatttttttttatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA