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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTCTACTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgttttcctggcatcataatatttgctttttataagttatattactgtatcttattttatttgtatctttcttaattcttatcatgaattttttcattggagatttttaatgccattttagttctctgtcattgtgttctcgataatgttagcagcatgattatttgaaaacctgtatgtag

Basic information

species Glycine max
transcript GLYMA04G07300.1
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18732854|gb|BM527286.1|BM527286
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|192310390|gb|FK002270.1|FK002270
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|208189174|gb|GD983620.1|GD983620
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|9203730|gb|BE329954.1|BE329954
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|14206242|gb|BG839920.1|BG839920
EST:     CCCCTAGGCGTTTCAGGAGCCCACCKKCCACGTGGAAGAKCTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTMCACGCAGTCCACGATA
genomic: CCCCTAGGCGTTTCAGGAGCCCACC-ACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|208325379|gb|GE124087.1|GE124087
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|9203549|gb|BE329773.1|BE329773
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|20815080|gb|BQ299558.1|BQ299558
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|254314809|gb|GR829802.1|GR829802
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|20815090|gb|BQ299568.1|BQ299568
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|192310391|gb|FK002271.1|FK002271
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|22927307|gb|BU544446.1|BU544446
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGANCTCCCCCANN                         NTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
EST: gi|18734340|gb|BM528125.1|BM528125
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAG                         GTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgtttt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATTCTACTTACAGAAGGTTTTCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGgttttgttttcctggcatcataatatttgctttttataagttatattactgtatcttattttatttgtatctttcttaattcttatcatgaattttttcattggagatttttaatgccattttagttctctgtcattgtgttctcgataatgttagcagcatgattatttgaaaacctgtatgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC