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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGATTCACCTGGACAGACTTTTGTGGCATTTGAGAAGCCAGAGGGAGTGCCAACAGTTGGAAAATTTTCTAACGTTCTGAAATTTATTATTAAAGAGgtattatcctctttatttttgtgaagctttctggtttttttattatttgatatcatgattatgtttatattataattcaagcttgaagcttgtttttatttttttcatttagggaatttgtggaaaataatctataatatttttgtagcaatctcatctctagataaactgaatcttcttcag

Basic information

species Glycine max
transcript GLYMA04G01470.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01470.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 16
TTATGATTCACCTGGACAGACTTTTGTGGCATTTGAGAAGCCAGAGGGAGTGCCAACAGTTGGAAAATTTTCTAACGTTCTGAAATTTATTATTAAAGAGgtattat-----cctctttatttttgtgaagctttctggtttttttattatttgatatcatgattatgtttatattataattcaagcttgaagcttgtttttatttttttcatttagggaatttgtggaaaataatctataatatttttgtagcaatctcatctctagataaactgaatcttcttcag
|||||||||||| ||||| || ||||||||||||||||||||||| ||||| ||  ||||||||||||| || ||  |  |||| || ||| |||||||||||  ||      | | |||| | ||| | | |   |||   | ||  |  |  ||||      ||| || | |  |  | ||     ||||  || | | |   ||                                                                                 
TTATGATTCACCAGGACAAACATTTGTGGCATTTGAGAAGCCAGATGGAGTCCCTGCAGTTGGAAAATTCTCAAATATGTTGAAGTTCATTGTTAAAGAGgtacgatatctctccccttatctctgtca-gatgcatggcactctttcttctccatattt---ctatattcagaccaagactc----ctgaaagttatatatgaattg--------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6455399|gb|AW186082.1|AW186082
EST:     TGCCAACAGTTGGAAAATTTTCTAACGTTCTGAAATTTATTATTAAAGAG                         GTTGACCCAACCACGGGTGAGGCTGAAGATGACGGTGTTGAAGATGAATAC
genomic: TGCCAACAGTTGGAAAATTTTCTAACGTTCTGAAATTTATTATTAAAGAGgtattatcct ... tcttcttcagGTTGACCCAACCACGGGTGAGGCTGAAGATGACGGTGTTGAAGATGAATAC
EST: gi|10236799|gb|BE805687.1|BE805687
EST:     TGCCAACAGTTGGAAAATTTTCTAACGTTCTGAAATTTATTATTAAAGAG                         GTTGACCCAACCACGGGTGAGGCTGAAGATGACGGTGTTGAAGATGAATAC
genomic: TGCCAACAGTTGGAAAATTTTCTAACGTTCTGAAATTTATTATTAAAGAGgtattatcct ... tcttcttcagGTTGACCCAACCACGGGTGAGGCTGAAGATGACGGTGTTGAAGATGAATAC
EST: gi|151393638|gb|EV263513.1|EV263513
EST:     TGCCAACAGTTGGAAAATTTTCTAACGTTCTGAAATTTATTATTAAAGAG                         GTTGACCCAACCACGGGTGAGGCTGAAGATGACGGTGTTGAAGATGAATAC
genomic: TGCCAACAGTTGGAAAATTTTCTAACGTTCTGAAATTTATTATTAAAGAGgtattatcct ... tcttcttcagGTTGACCCAACCACGGGTGAGGCTGAAGATGACGGTGTTGAAGATGAATAC