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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGTTGATCTCTTCAGGATACTTGGTGAGCAAGTACAAATTGTTCGGGATAATAGCACTGATCTCATGTTATACAGAATTGCCTTGGCAACCATTCAGgtaatatcagataaggcatagatgtagcgaaactgatgcttattataaatttatcttttcaaaaattaactctaggaaaataaaggcaaactggacagaa...

Basic information

species Glycine max
transcript GLYMA03G03120.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 15
TGCTGTTGATCTCTTCAGGATACTTGGTGAGCAAGTACAAATTGTTCGGGATAATAGCACTGATCTCATGTTATACAGAATTGCCTTGGCAACCATTCAGgtaatatcagataag-----gcatagatgtagcgaaactgatgcttattataaatttatcttttcaaaaattaactctaggaaaataaaggcaaactggacagaa
|||||||||  | || ||||| || || ||||| || |||||||||||||| |||||||||||| ||||| ||||||||||||| |||||   ||||||||||   |||| |        |  | | | ||   ||| | |    ||||||        | ||| | || | ||   |||||||           ||||      
TGCTGTTGACTTATTTAGGATCCTAGGAGAGCAGGTGCAAATTGTTCGGGAGAATAGCACTGATGTCATGCTATACAGAATTGCTTTGGCTGTCATTCAGgtagattcagcttcacagttgtttggttatactaaaaatcagatgtattatgctaaatgccttttacaactgaaacttaggaaatattgtttctgctggt-----

upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 5'ss of exon 15
TGCTGTTGATCTCTTCAGGATACTTGGTGAGCAAGTACAAATTGTTCGGGATAATAGCACTGATCTCATGTTATACAGAATTGCCTTGGCAACCATTCAGgtaatatcagataag-----gcatagatgtagcgaaactgatgcttattataaatttatcttttcaaaaattaactctaggaaaataaaggcaaactggacagaa
|||||||||  | || ||||| || || ||||| || |||||||||||||| |||||||| ||| ||||| ||||||||||||| |||||   ||||||||||   |||| |        |  | | | ||   ||| | |    ||||||        | ||| | || | ||   ||||| |           ||||      
TGCTGTTGACTTATTTAGGATCCTAGGAGAGCAGGTGCAAATTGTTCGGGAGAATAGCACCGATGTCATGCTATACAGAATTGCTTTGGCTGTCATTCAGgtagattcagcttcacagttgtttggttatactaaaaattagatgtattatgctaagtgccttttacaactgaaacttaggatatgttgtttctgctggt-----