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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTATGAAGCTGCTCAGCAAGCAGCAATTCATAACACTATCATGAAGTTTCCCGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTAAAGgtgatagaaattccccattcattttaaatatgtttctcagcattatgtttttagctgattatttgttcagggtaagaaggggtatgggattgcaaatctc...

Basic information

species Glycine max
transcript GLYMA02G40490.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G40490.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 19
GTCTATGAAGCTGCTCAGCAAGCAGCAATTCATAACACTATCATGAAGTTTCCCGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTAAAGgtgatagaaattcc-ccattcattt-taaatatgtttctcagcattat-gtttttagctgattatttgttcagggta-agaaggggtatgggattgcaaatctc
|| ||||| |||||||  |  |||||||||||| ||||||||||||| || || || ||||||||||||||||||||||| || ||||| |||||||  |   | |  | | | | |   | || | ||| ||| | |  | |   ||   ||| |  || |   ||||  ||  ||||   |    ||  ||    
GTGTATGATGCTGCTCGACGTGCAGCAATTCATGACACTATCATGAATTTCCCTGAGAAATATTCAACTGTTGTGGGAGAACGGGGGCTCAAGgtgagtggcctgctgctactgactgacagatgtatttttcaacttcgttgcagttctttgagtgcttctgttgggtggagttggggggggaaggtgagaa----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193644846|gb|FK592054.1|FK592054
EST:     TGAAGTTTCCCGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTAAAG                         TTAAGTGGTGGTGAGAAGC
genomic: TGAAGTTTCCCGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTAAAGgtgatagaaa ... tttttaacagTTAAGTGGTGGTGAGAAGC
EST: gi|51341587|gb|CO982904.1|CO982904
EST:     TGAAGTTTCCCGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTAAAG                         TTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTGGCTCGTGCATTCTTAAAA
genomic: TGAAGTTTCCCGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTAAAGgtgatagaaa ... tttttaacagTTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTGGCTCGTGCATTCTTAAAA
EST: gi|193689046|gb|FK630067.1|FK630067
EST:     AAGTTTCCCGATAAATATTCAACTGTTGTGGGAGAGCGAGGGACTAAAAG                         TTAAGTGGTGGTGAGAAGC
genomic: AAGTTTCCCGATAAATATTCAACTGTTGTGGGAGAGCGAGGG-CTAAA-Ggtgatagaaa ... tttttaacagTTAAGTGGTGGTGAGAAGC