Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGGCATGAAGAGCCAAAAGTTGCAACAGATGAATATGAGCAAGGAACATATGTGTACTTTGATTTCCATATTGCAAATGATGATCTGCAACATGGGTGgtaagcttctggctactatcaattttatttcaaaacaatcctattgattgtaatttctagttttctcttttctggttctgtccatgaaatggttgattttgttggtatttgacacggcatttctggttgtcctgagttctgtgccttgatttgattattctcag

Basic information

species Glycine max
transcript GLYMA02G07830.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07830.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os03g44900.2 (Oryza sativa), 5'ss of exon 14
AACGGCATGAAGAGCCAAAAGTTGCAACAGATGAATATGAGCAAGGAACATATGTGTACTTTGATTTCCATATTGCAAATGATGATCTGCAACATGGGTGgtaagcttctggctactatcaattttatttcaaaa-caatcctattg------attgtaatttctagtttt-ctcttttctggttctgtccatgaaatggttgattttgttggtatttgacacggcatttctggttgtcctgagttctgtgccttgatttgattattctcag
||||||| |  |||||| ||||| |||| ||||| |||||||  ||| | ||||||||||||||||||||| |   | |||| |       |   || ||||| | ||      |  ||    |  || | | || | ||  | | |      ||||   |||| | |     ||| |  | | |  |  ||  |      |  |  |  |  | | | | | || |    |  | | | || |||        | ||    ||  |  |||
AACGGCACGTGGAGCCACAAGTTACAACTGATGAGTATGAGCGGGGATCTTATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaataacatcattgcatgcatattagaatctattttctggcatggtattgctgtttccaatcgagttctctattagctgggctcagtatggcagtagtaatactaatttctaagatggtacccttcttcgac-tgtgtttaacttgcttataccgttgcttgcag

upper sequence: GLYMA02G07830.1 (Glycine max), 5'ss of exon 16
lower sequence: AT5G18230.1 (Arabidopsis thaliana), 5'ss of exon 15
AACGGCATGAAGAGCCAAAAGTTGCAACAGATGAATATGAGCAAGGAACATATGTGTACTTTGATTTCCATATTGCAAATGATGA---TCTGCAACATGGGTGgtaagcttctggctactatcaattttatttcaaaacaatcctattgattgtaatttctagttttctcttttctggttc--tgtccatgaaatggttgattttgttggtatttgacacggcatttctggttgtcctgagttctgtgccttgatttgattattctcag
   | ||| ||||||||||  ||||||| ||||||||||| |||||| | || || ||||| |||||||| |   | || || ||   ||   ||   || ||||| | ||      |   |   |   ||| || |    || | ||  ||| |  |  || |  |    ||| |  ||   ||||  || |                                                                            
---GACATAAAGAGCCAAAGATTGCAACCGATGAATATGAACAAGGAGCCTACGTTTACTTCGATTTCCAAACCCCGAAAGACGAGAATCAAGAAGGAGGATGgtatgatttcattcatgttt--tccgattacacattgttcttcttctttggagatggtaatcgtaatgttttttcttaaatgtctgtgtag---------------------------------------------------------------------------

upper sequence: GLYMA02G07830.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv08s0007g07570.t01 (Vitis vinifera), 5'ss of exon 15
AACGGCATGAAGAGCCAAAAGTTGCAACAGATGAATATGAGCAAGGAACATATGTGTACTTTGATTTCCATATTGCAAATGATGATCTGCAACATGGGTGgtaagcttctggctactatcaattttatttcaaaacaatcctattgattgtaatttctagttttctcttttctggttctgtccatgaaatggttgattttgttggtatttgacacggcatttctggttgtcctgagttctgtgccttgatttgattattctcag
|  ||||||| |||||||||||||| || ||||||| ||| || || ||||||||||||||||||||||||||||| |||||||| || |||||||| ||||| | ||      ||  | | | ||   |  || |  |  |  |  |    || | | |||      || |   |       |  |||   ||  || | ||  | |                                                        
AGAGGCATGAGGAGCCAAAAGTTGCCACTGATGAATTTGAACAGGGGACATATGTGTACTTTGATTTCCATATTGCTAATGATGACCTACAACATGGATGgtatg-ttgacataacacttactctttacttgaagc--ttttgcttgtgaccatgtttggttgatatcttacaaata------aacaaactcttagttatattattttg-------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7590888|gb|AW706631.1|AW706631
EST:     TATGTGTACTTTGATTTCCATATTGCAAATGATGATCTGCAACATGGGTG                         GTGTCAAAGAATCAAGACCGACTTCACCTTTGAATATAATTATCTTGAAGA
genomic: TATGTGTACTTTGATTTCCATATTGCAAATGATGATCTGCAACATGGGTGgtaagcttct ... ttattctcagGTGTCAAAGAATCAAGACCGACTTCACCTTTGAATATAATTATCTTGAAGA
EST: gi|254336764|gb|GR842943.1|GR842943
EST:     TATGTGTACTTTGATTTCCATATTGCAAATGATGATCTGCAACATGGGTG                         GTGTCAAAGAATCAAGACCGACTTCACCTTTGAATATAATTATCTTGAAGA
genomic: TATGTGTACTTTGATTTCCATATTGCAAATGATGATCTGCAACATGGGTGgtaagcttct ... ttattctcagGTGTCAAAGAATCAAGACCGACTTCACCTTTGAATATAATTATCTTGAAGA
EST: gi|13481733|gb|BG511076.1|BG511076
EST:     TATGTGTACTNTGATTTCCATATTGCAAATGATGATCTGCAACATGGGTG                         GTGTCAAAGAATCAAGACCGACTTCACCTTTGAATATAATTATCTTGAAGA
genomic: TATGTGTACTTTGATTTCCATATTGCAAATGATGATCTGCAACATGGGTGgtaagcttct ... ttattctcagGTGTCAAAGAATCAAGACCGACTTCACCTTTGAATATAATTATCTTGAAGA