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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGGTCATTGGGTTCTCTCTTGGTCTGGGACCCATCCCTTGGCTTATAATGTCTGAGgtatgaaatacttcttagcatgcaaaagatcagaaggatctagtaattgttgcattatctactatgaatctgatgcaaacacactattaattgtgttcattgaatatgtgggtaatttctaacttgtttgataatgcttttcag

Basic information

species Glycine max
transcript GLYMA02G06280.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06280.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv04s0023g01860.t01 (Vitis vinifera), 5'ss of exon 16
GTTATGGTCATTGGGTTCTCTCTTGGTCTGGGACCCATCCCTTGGCTTATAATGTCTGAGgtatgaaatacttcttagcatgcaaaagatcagaaggatctagt-aattgttgcattatctactatgaatctgatgcaaacacactattaattgtgttcattgaatatgtgggtaatttctaacttgtttgataatgcttttcag
| | |||| |||   |||||||| ||  | ||| |||| |||||| |||||||||| |||||||||||||||       ||  ||| ||    || | | |    || | | |||  |       |  |  || |  ||||   ||  | |     |  |||                                           
GCTTTGGTAATTACCTTCTCTCTAGGAGTTGGAGCCATTCCTTGGGTTATAATGTCCGAGgtatgaaatactagactttatataaaggacagaaaagcttttcccaaatttggcacaaaaggtcttcga--tgctataaactatctgatgaggaattcaatt-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311160|gb|FK004793.1|FK004793
EST:     TTGGGTTCTCTCTTGGTCTGGGACCCATCCCTTGGCTTATAATGTCTGAG                         ATACTTCCAGTGAATATAAAGGGCCTTGCTGGCAGCATAGCGACAATGGGA
genomic: TTGGGTTCTCTCTTGGTCTGGGACCCATCCCTTGGCTTATAATGTCTGAGgtatgaaata ... tgcttttcagATACTTCCAGTGAATATAAAGGGCCTTGCTGGCAGCATAGCGACAATGGGA
EST: gi|192311159|gb|FK004792.1|FK004792
EST:     TTGGGTTCTCTCTTGGTCTGGGACCCATCCCTTGGCTTATAATGTCTGAG                         ATACTTCCAGTGAATATAAAGGGCCTTGCTGGCAGCATAGCGACAATGGGA
genomic: TTGGGTTCTCTCTTGGTCTGGGACCCATCCCTTGGCTTATAATGTCTGAGgtatgaaata ... tgcttttcagATACTTCCAGTGAATATAAAGGGCCTTGCTGGCAGCATAGCGACAATGGGA