Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATTTTATAGAACCAGCGCATGACAAGCAGGATTTTGAGAGATCAGTGCTGTTCATTCGGTTGGAAAACAAACTGAAACAAATGACAATGGATTACTGgtttgttactgtattacatagtttgtcttggaacagttttcttttattttgttgtagaattatatatcttggtttctacgaaggttgtacatactttagt...

Basic information

species Glycine max
transcript GLYMA02G05800.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05800.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G021864_T01 (Zea mays), 5'ss of exon 14
CCAATTTTATAGAACCAGCGCATGACAAGCAGGATTTTGAGAGATCAGTGCTGTTCATTCGGTTGGAAAACAAACTGAAACAAATGACAATGGATTACTGgtttgttactgtattacatagtttgtcttg-gaacagttttcttttattttgttgtagaattatatatcttggtttctacgaaggttgtacatactttagt-
| |||||||| |||||||| |||||||| || |||||||||||  ||    |||| |||||| | ||||  | ||| | |||||| |  || |||| |||||  ||  ||      || |  ||  |||| | ||     | || ||      |  | || |||   | |       |    | || | | |      |   
CAAATTTTATTGAACCAGCACATGACAAACAAGATTTTGAGAGGACACCATTGTTTATTCGGCTAGAAACAAGACTTAGACAAATTATTATTGATTTCTGgtaagt-gcttcgcc-cagatctttccttgtgcacctcaatattctaggcaaatacacaactattcctataccacattgaatatgtagcagaagaaaaaaag

upper sequence: GLYMA02G05800.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv04s0023g02740.t01 (Vitis vinifera), 5'ss of exon 14
CCAATTTTATAGAACCAGCGCATGACAAGCAGGATTTTGAGAGATCAGTGCTGTTCATTCGGTTGGAAAACAAACTGAAACAAATGACAATGGATTACTGgtttgttactgtattacatagtttgtcttggaacagttttcttttattttgttgtagaattatatatcttggtttctacgaaggttgtacatactttagt--
| |||||||||||||||||||||||||| ||||||||||||||||||   ||||| || ||  | ||||  || ||||||||||||  |||||| |||||||||||| | ||      | ||||  ||    ||| |  |  || |||   || |  |  ||   |    |  ||    |||     ||    ||  | |  
CTAATTTTATAGAACCAGCGCATGACAAACAGGATTTTGAGAGATCATCTCTGTTTATCCGTCTCGAAACAAAGCTGAAACAAATGCTAATGGACTACTGgtttgtttc-gt-ccgtttggtttacctgctcacactagttcttgattaaattttgaagataagcaatgagaatttggggaattccatattatctaaaatca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207695035|gb|GD677118.1|GD677118
EST:     CTGTTCATTCGGTTGGAAAACAAACTGAAACAAATGACAATGGATTACTG                         GAGAGAACACTGTCACTTGGTTGGATATCAGCCACCAAATTTGAAATCAC
genomic: CTGTTCATTCGGTTGGAAAACAAACTGAAACAAATGACAATGGATTACTGgtttgttact ... gactaaacagGAGAGAACACTGTCACTTGGTTGGATATCAGCCACCAAATTTGAAATCAC
EST: gi|17024094|gb|BM095128.1|BM095128
EST:     CTGTTCATTCGGTTGGAAAACAAACTGAAACAAATGACAATGGATTACTG                         GAGAGAACACTGTCACTTGGTTGGATATCAGCCACCAAATTTGAAATCACN
genomic: CTGTTCATTCGGTTGGAAAACAAACTGAAACAAATGACAATGGATTACTGgtttgttact ... gactaaacagGAGAGAACACTGTCACTTGGTTGGATATCAGCCACCAAATTTGAAATCACA