Sequence
atgc intronic sequence ATGC exonic sequenceAGATCGAGTTTATACAGAGAGAAGACGAGCCCTTGAATCTGACAACCTTCAGTCTCTTCTTATTGAATATGCTGAATTGACAATGGATGACATTTTAGAAgtaagccttgctaaaattatgctcctctttgtaccttgcttcattgtctaacttaataatgcaatcatgatgaattag
Basic information
species | Glycine max |
transcript | GLYMA02G01060.2 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G01060.2 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os01g21820.1 (Oryza sativa), 5'ss of exon 15
AGATCGAGTTTATACAGAGAGAAGACGAGCCCTTGAATCTGACAACCTTCAGTCTCTTCTTATTGAATATGCTGAATTGACAATGGATGACATTTTAGAAgtaagccttgctaa--aattatgctcctctttgtaccttgcttcattgtctaacttaataatgcaatcatgatgaattag------------------------------
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AGATCGAGTATATGCAGAAAGAAGACGCGCTCTTGCGTCTGATAGTCTTGAATCACTTATTGTGGAATATGCTGAATTAACAATTGATGACATTTTAGAGgttagttacacttaccagctacaatttt-tatatatgtagtttggtagctgttcctaa--atacattaatgataagcctcattgttctaagccttttctcttatcggtag
upper sequence: GLYMA02G01060.2 (Glycine max), 5'ss of exon 16
lower sequence: AT4G01800.1 (Arabidopsis thaliana), 5'ss of exon 16
AGATCGAGTTTATACAGAGAGAAGACGAGCCCTTGAATCTGACAACCTTCAGTCTCTTCTTATTGAATATGCTGAATTGACAATGGATGACATTTTAGAAgtaagccttgctaaaattatgctcctcttt-gtaccttgcttcattgtctaacttaata-atgcaatcatgatgaattag---------------
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AGATCGTGTTTATACAGAGAGAAGGCGTGCTCTTGTGTCGGACAGCCTTGAGCCTCTGATTATCGAGTATGCTGAATTGACAATGGATGACATTCTAGAGgtaagccgtttgatattgatgcccagctaaagaaggtcgttattccccccgagtctttgtataccaacagttgaaactcgttttaccattactag
upper sequence: GLYMA02G01060.2 (Glycine max), 5'ss of exon 16
lower sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 17
AGATCGAGTTTATACAGAGAGAAGACGAGCCCTTGAATCTGACAACCTTCAGTCTCTTCTTATTGAATATGCTGAATTGACAATGGATGACATTTTAGAAgtaag-ccttgctaaaattatgctcctctttg-taccttgcttcattgtctaacttaa-taatgcaatcatgatgaattag----------------------------------
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GGACCGTGTATATGCAGAGAGAAGGCGAGCCCTTGAATCTAACAACCTCCAATCTCTTCTTATTGAATATGCTGAACTGACAATGGATGACATCTTGGAGgtaaaatcatcctgggttttttgttcgctagacttcccttttttcccatctattgcaagttatacacaccagttccttgagatattaacagattgttgtatttaatgatgtatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7691968|gb|AW760085.1|AW760085EST: AGTCTCTTCTTATTGAATATGCTGAATTGACAATGGATGACATTTTAGAA GCAAACATTGGTTCTGATGCTCCAAAAGACAGCTGGGATCTGGAAAAACTA
genomic: AGTCTCTTCTTATTGAATATGCTGAATTGACAATGGATGACATTTTAGAAgtaagccttg ... gatgaattagGCAAACATTGGTTCTGATGCTCCAAAAGACAGCTGGGATCTTGAAAAACTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATCGAGTTTATACAGAGAGAAGACGAGCCCTTGAATCTGACAACCTTCAGTCTCTTCTTATTGAATATGCTGAATTGACAATGGATGACATTTTAGAAgtaagccttgctaaaattatgctcctctttgtaccttgcttcattgtctaacttaataatgcaatcatgatgaattag
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