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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGTCAAAATTAGTCGCCTTCAGGAATATGTCAAGTCTGAATATGACCATTGTTGTCTACGCTCCTGTCGATCACGGGCTTTGTACAAAGGGATGAAGgtttgacttgcaaagcatttaacatgatggagtaatttccatgaagtcctagcctgttacttttattaatataattattcttgttataagaagacacatg...

Basic information

species Glycine max
transcript GLYMA01G41140.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G41140.1 (Glycine max), 5'ss of exon 16
lower sequence: AT5G47020.1 (Arabidopsis thaliana), 5'ss of exon 17
GAGAGTCAAAATTAGTCGCCTTCAGGAATATGTCAAGTCTGAATATGACCATTGTTGTCTACGCTCCTGTCGATCACGGGCTTTGTACAAAGGGATGAAGgtttgacttgcaaagcatttaacatgatggagtaatttccatgaagtcctagcctgttacttttattaa-tataattattcttgttataagaagacacatg
 ||    ||||||  ||||||||| ||||||||||| ||| |||||||||||| ||| || ||||| ||  ||||  | ||| | ||||||||||||||||||||  || |  |  |  ||| || ||           |||| ||  |||   | | | ||| | |   | |    |   | |   ||            
CAGGAGAAAAATTCATCGCCTTCAAGAATATGTCAAATCTCAATATGACCATTCTTGCCTCCGCTCATGCAGATCTAGAGCTCTCTACAAAGGGATGAAGgtttggatt-cttattaactaatataat-----------catgtagctctaagttctcattttgactgtctgtgtccaacgtcgaagtag-----------

upper sequence: GLYMA01G41140.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv02s0012g00460.t01 (Vitis vinifera), 5'ss of exon 16
GAGAGTCAAAATTAGTCGCCTTCAGGAATATGTCAAGTCTGAATATGACCATTGTTGTCTACGCTCCTGTCGATCACGGGCTTTGTACAAAGGGATGAAGgtttgacttgcaaagcatttaacatgatggagtaatttccatgaagtcctagcctgttacttttattaatataattattcttgttataagaagacacatg
|||    || |||  |||||||||||||| |||||| ||||||||||| ||||  ||||| ||||| ||| | ||| ||||| | |||||||| |||||||| ||  ||   | || |||   || ||     | |||     |  | | ||  || ||  |    |  ||   || | | || |  |    |  |||  
GAGGAATAAGATTCATCGCCTTCAGGAATTTGTCAAATCTGAATATGATCATTCATGTCTCCGCTCATGTAGGTCAAGGGCTCTATACAAAGGCATGAAGgtctggtttattatgcgtttgttatcataagccatttttttgcacttgccagtttgctaaatgacattttaatcttttgcatgcttaatattgggacaat