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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCACCTTGCAGCAACCTTTCTCACGGCTCACAACATTGCACATGGAATCAATTTGAAAAAATCTCCTGTGCTTCAATATTTATATTATTTAGCCCAGgtatggcccttttttcaattgattacttggttgtgatatttgtagttgctaattttagtttatttttttattag

Basic information

species Glycine max
transcript GLYMA01G29470.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G29470.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 15
TGACCACCTTGCAGCAACCTTTCTCACGGCTCACAACATTGCACATGGAATCAATTTGAAAAAATCTCCTGTGCTTCAATATTTATATTATTTAGCCCAGgta----------tggcccttttttcaattgat-tacttggttgtgatattt--gtagttgctaatt---ttagtttatttttttattag--
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TGACCACCTTGCTGCAACCTTTCTTACGTCTCACAATATTGCACATGGAATTAATTTGAGAAAATCTCCTGTACTTCAGTATCTGTATTACTTAGCACAGgtaaaaagggagatgatgctgttttgaatatatctacactgacttgattattccatagtatctgattggctgtgattgcatgttggttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9565158|gb|BE474667.1|BE474667
EST:     TCAATTTGAAAAAATCTCCCGTGCTTCAATATTTATATTATTTAGCCCAG                         ATTGGGCTGGCAATGTCTCCTTTGAGCAATAACTCCCTATTCTTAGACTAC
genomic: TCAATTTGAAAAAATCTCCTGTGCTTCAATATTTATATTATTTAGCCCAGgtatggccct ... tttttattagATTGGGCTGGCAATGTCTCCTTTGAGCAATAACTCCCTATTCTTAGACTAC