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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAACCAGGAAACCCACAAACAACAGTTATCCAGGCTACTTTTATGAATTTGTCCTCCAATACATATACAGATTTTGTTTTCCAGGCAGCAGTTCCTAAGgtattccaatcagtatgctattaagctttctgcatgcagtgctaagatcatcatgattattgtaattataaagatatcatttgaatttactgcttttaac...

Basic information

species Glycine max
transcript GLYMA01G03890.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03890.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os02g56110.1 (Oryza sativa), 5'ss of exon 18
ACAACCAGGAAACCCACAAACAACAGTTATCCAGGCTACTTTTATGAATTTGTCCTCCAATACATATACAGATTTTGTTTTCCAGGCAGCAGTTCCTAAGgtattccaatcagtatgctattaa--gctttctgcatgcagtgctaagatcatcatgattattgtaattataaagatatcatttgaatttactgcttttaac
 || || |  || |||||    ||     |||| ||||||||||  |||||| | |||| | | ||||| ||||||||||| |||||||| ||||| ||||||     ||        |||  |  |  ||||  ||     |||    | |     |||| ||| ||   |   |  |  |   |  | |||      | |
GCAGCCTGAGAAACCACACGAGACTACCGTCCATGCTACTTTTACAAATTTGACATCCAGTTCTTATACGGATTTTGTTTTTCAGGCAGCTGTTCCAAAGgtagcatcatggcgcctttatctattgtcttctatatttga-gctgtccttacttgcattagtgttatggcatgcaagttctcaaatctcact-tgacgagc

upper sequence: GLYMA01G03890.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 16
ACAACCAGGAAACCCACAAACAACAGTTATCCAGGCTACTTTTATGAATTTGTCCTCCAATACATATACAGATTTTGTTTTCCAGGCAGCAGTTCCTAAGgtattccaatcagtatgctattaagct-ttctgcatgcagtgctaagatcatcatgattattgtaattata--aagatatca-tttg-aatttactgcttttaac
   ||| | ||| || ||||||||| |  ||||||| | |||||  ||||||||  | ||||  | |||||||||| |||||||||||||||| || ||||||     |  ||    || | || || ||   |   | ||       |||   |  |  || || || |   || || ||| |||| |||||    | | ||  
GACACCTGCAAATCCGCAAACAACATTGGTCCAGGCCAGTTTTACAAATTTGTCACCTAATATCTTTACAGATTTTATTTTCCAGGCAGCAGTCCCAAAGgtaac---actagatgactgtcaatctgttgaactctctgtttcttcttcactgtattacttatatttctgttaatatgtcaatttgtaatttgacccatcta--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269554|gb|BM885810.1|BM885810
EST:     TGTCCTCCAATACATATACAGATTTTGTTTTCCAGGCAGCAGTTCCTAAG                         TTTCTTCAGTTGCACTTAGATCCAGCTAGCAGCAATACTCTTCCCGCAAAT
genomic: TGTCCTCCAATACATATACAGATTTTGTTTTCCAGGCAGCAGTTCCTAAGgtattccaat ... caattttcagTTTCTTCAGTTGCACTTAGATCCAGCTAGCAGCAATACTCTTCCCGCAAAT
EST: gi|22523555|gb|BU082357.1|BU082357
EST:     TGTCCTCCAATACATATACAGATTTTGTTTTCCAGGCAGCAGTTCCTAAG                         TTTCTTCAGTTGCACTTAGATCCAGCTAGCAGCAATACTCTTCCCGCAAAT
genomic: TGTCCTCCAATACATATACAGATTTTGTTTTCCAGGCAGCAGTTCCTAAGgtattccaat ... caattttcagTTTCTTCAGTTGCACTTAGATCCAGCTAGCAGCAATACTCTTCCCGCAAAT