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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTGgtatgtttccctttattgtccaaattcaatctattctaccggtaaaagttgcagagttttttatcagatattttatgcttgattgttcttatggaccttag

Basic information

species Glycine max
transcript GLYMA20G25100.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 15
lower sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 14
GTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTGgtatgtttccctttattgtccaaattcaatctattctaccggtaaaagttgcagagttttttatcagatattttatgcttgattgttcttatggaccttag
|||||| || |||||||| || |||||    | |||  | || |||||||||||||| || ||||||||||| || ||||||||||| || |||||    ||||||   |  | |   |   | | |  |    | |  | | |  |    |||         |  |||| |||| || | |  | |     ||
GTATATGTATATTCCTCTAGGTGGATCACGAAGAAAATTTCTGAATGTGTGGGTTGTATTTACATTTGTTGCCATGTGGCATGATTTGGAATGgtaa---tcccttgccttcctatgattcctttgtgttgtatgaatcattcgatgcaactttc--------tcatatggttgactgctgtgtttgcaaccag

upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv00s0507g00020.t01 (Vitis vinifera), 5'ss of exon 8
GTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTGgta-tgtttcccttt---attgtccaaattcaatctattctaccggtaaaagttgca---gagttttttatcagatattttatgcttgat----tgttcttatggaccttag
||| || ||||||||||||||||| ||| ||| |||||| || ||| | |||||| | |||||||||||||| || ||||| || ||||||||||| |  || | |||   | | | | |||    | |    |  | || |||         ||  ||||||     || |       |||     | ||  | | ||||||||
GTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAATATATGGGTTATATTCACATTTGTTGCTATATGGCACGACTTAGAGTGgtactacttgctttttcaagttttccaatcactttttccttgacagtgaaaacgaagtatgaaatttttaaatcctactcctcatctgacagtgtattggttttgaccttag

upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv00s0449g00010.t01 (Vitis vinifera), 5'ss of exon 8
GTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTGgta-tgtttcccttt----attgtccaaattcaatctattct-accggt--aaaagttgca-gagttttttatcagatattttatgcttgat----tgttcttatggaccttag
||| || ||||||||||||||||| ||| ||| |||||| || ||  | |||||| | ||||||||||||||  | |||||||| ||||||||||| |  || | |||     || |||||  ||| | | | ||   | ||  |||||  | | || |||||||     ||||       |||     | ||  | | ||||||||
GTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAACATATGGGTTATATTCACATTTGTTGCTGTATGGCATGACTTAGAGTGgtactacttgctttttcaagttttccaatgtcactttttccttgacagtgaaaaagaagtatgaattttttaaatcctattcctcatctgacagtgtattggttttgaccttag