Sequence
atgc intronic sequence ATGC exonic sequenceGTTTGGATAAATTTGGGACCTCTACTTTATCACTTTGCAGATATGTATGGACAGGATGATgtatgactccttttcttttcacatactatatcacatcacttgtttggtgggtactatcttactctggagtctggactttgtctgtag
Basic information
species | Glycine max |
transcript | GLYMA20G16030.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G16030.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv18s0041g00100.t01 (Vitis vinifera), 5'ss of exon 15
GTTTGGATAAATTTGGGACCTCTACTTTATCACTTTGCAGATATGTATGGACAGGATGATgtatgactccttttcttttcacatac----tatatcaca-tcacttg---tttggtgggtactatcttac---tctggagtctggactttgtctgtag-------------------------------
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GTCTGGATCAATTTTGGACCCCTGCTGTATCACTTTGCGGATATGTATGGACAAGAAGATgttagactctttcccttaagacacacagtttaaatgacagttacatgacgtttaagatgcaatagctggtatgtttgtttattcatttttttctataaatgttcctcatttttctttttctccttctag
upper sequence: GLYMA20G16030.1 (Glycine max), 5'ss of exon 15
lower sequence: PP1S249_29V6.1 (Physcomitrella patens), 5'ss of exon 15
GTTTGGATAAATTTGGGACCTCTACTTTATCACTTTGCAGAT------ATGTATGGACAGGATGATgtatgactccttttcttttcacatactatatcacatcacttgtttggtgggtactatcttactctggagtctggactttgtctgtag
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GTTTGGATAAATTTGGGCCCCTTACTTTATCACTTTGCCgctgaaacaacttactctccagaagaggcaag---ttcttctgtctcaaattttacgactgataattgggaatgctggt-cgatttt-cttagagcaatggatga---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17024022|gb|BM095056.1|BM095056EST: ATTTGGGACCTCTACTTTATCACTTTGCAGATATGTATGGACAGGATGAT GAAATGTCCATTGAATTGAGTTTGGAAGATGTTAAGAGGGTCGCATTACAT
genomic: ATTTGGGACCTCTACTTTATCACTTTGCAGATATGTATGGACAGGATGATgtatgactcc ... ttgtctgtagGAAATGTCCATTGAATTGAGTTTGGAAGATGTTAAGAGGGTCGCATTACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTGGATAAATTTGGGACCTCTACTTTATCACTTTGCAGATATGTATGGACAGGATGATgtatgactccttttcttttcacatactatatcacatcacttgtttggtgggtactatcttactctggagtctggactttgtctgtag
- - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG