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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTACACCACACAACTGCTACTCCCAACAACCAAAACCCCAGCCTATTAAATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAGgtaactattgttatattaatcttaatatcttttcttgaaaaggcaatagatcttattccttttctcaatgtcag

Basic information

species Glycine max
transcript GLYMA20G11330.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G11330.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 23
GCTTACACCACACAACTGCTACTCCCAACAACCAAAACCCCAGCCTATTAAATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAGgtaact-attgttatattaatcttaatatcttttct-tgaaaaggcaatagatcttattccttttctcaatgtcag----------
||| ||| | |||||||| ||||| || ||||||||||||||||| ||||| ||||| ||||| || ||||||||||| ||| | ||||| ||||||| ||||| | |||         || ||||| | |  ||| |    |      |   ||| || | ||  ||||| |             
GCTCACATCTCACAACTGTTACTCTCAGCAACCAAAACCCCAGCCAATTAAGTACCGTGGGGTGGACCATTTGTCTGACATGCTGGTTCACTACAATCTGgtaatttattacatggcccatattaatgtatgctctgttttgacatggaaatccttttttcattgatcaatttatttttgggacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17519525|gb|BM188567.1|BM188567
EST:     AATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAG                         ACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA
genomic: AATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAGgtaactattg ... tcaatgtcagACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA
EST: gi|18690763|gb|BM519611.1|BM519611
EST:     GTTCATTACAATCAG                         ACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA
genomic: GTTCATTACAATCAGgtaactattg ... tcaatgtcagACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA
EST: gi|9565153|gb|BE474662.1|BE474662
EST:     AATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAG                         ACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA
genomic: AATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAGgtaactattg ... tcaatgtcagACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA
EST: gi|17153585|gb|BM143518.1|BM143518
EST:     CTGATATGTTAGTTCATTACAATCAG                         ACGACGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA
genomic: CTGATATGTTAGTTCATTACAATCAGgtaactattg ... tcaatgtcagACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA