Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGATGCATTGGCTAAAATGGTTGATCCTGCAATGAAAGGGTTATATCCTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAGgtactgtcagacacgttttgattcacccaaaatttattgattttgtaaatatggatggatttgggaaaccacgggggtggatgggaaatatttgtgcatggcttgttcatgtgattttttgtttatattatttggggcag

Basic information

species Glycine max
transcript GLYMA19G45130.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G45130.1 (Glycine max), 5'ss of exon 15
lower sequence: AT3G14350.3 (Arabidopsis thaliana), 5'ss of exon 16
TATTGATGCATTGGCTAAAATGGTTGATCCTGCAATGAAAGGGTTATATCCTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAGgtactgtcagacacgttttgattcaccca---aaatttattgattttgtaaatatggatggatttgggaaaccacgggggtggatgggaaatatttgtgcatggcttgttcatgtgattttttgtttatattatttggggcag
 |||||||| ||||  |||||||||||||| ||  | |||||| |||| || ||||| || || || |||||||| |||||||| || |||||||| |||||| |     | |  || | ||      |    ||   ||  | | ||  ||| |  || | | |   || |       |                                                               
CATTGATGCTTTGGGCAAAATGGTTGATCCAGCTCTCAAAGGGCTATACCCGGTTAAATCCCTCTCCCGATTTGCAGATGTTATCGCCCTTTGCGTCCAGgtaatcatctatatattataatgtgatgatctgaacaaatgaaatctg--aatgtatattgttcttttaatctgttacag---------------------------------------------------------------

upper sequence: GLYMA19G45130.1 (Glycine max), 5'ss of exon 15
lower sequence: AT1G53730.2 (Arabidopsis thaliana), 5'ss of exon 15
TATTGATGCATTGGCTAAAATGGTTGATCCTGCAATGAAAGGGTTATATCCTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAGgta--ctgtcagacacgttttgattcacccaaaatttattgattttgtaaatatggatggatttgggaaaccacgggggtggatgggaaatatttgtgcatggcttgttcatgtgattttttgtttatattatttggggcag
 |||||||| || || |||||||||||||| ||  | |||||| | |||||||| || || |||||||||||||| |||||||| ||||| || || ||||||  ||    | |||   | || ||   |||| |  |   | | | | | |     ||| | | |      |   |                                                                 
CATTGATGCTTTAGCCAAAATGGTTGATCCAGCTCTTAAAGGGCTTTATCCTGTCAAATCCCTTTCTCGATTTGCAGATGTTATCGCTCTCTGTGTCCAGgtaaactaatggtcacaaatcgagtcttgcaaattcaagaaagtcttttactgattttgggtcttgtttcttaacag-----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207693825|gb|GD676352.1|GD676352
EST:     CTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAG                         CCGGAGCCAGAATTCCGACCACCGATGTCAGAAGTGGTTCAAGCACTGGTG
genomic: CTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAGgtactgtcag ... tttggggcagCCGGAGCCAGAATTCCGACCACCGATGTCAGAAGTGGTTCAAGCACTGGTG
EST: gi|31466756|gb|CD408784.1|CD408784
EST:     GTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAG                         CCGGAGCCAGAATTCCGACCACCGATGTCAGAAGTGGTTCAAGCACTGGTG
genomic: GTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAGgtactgtcag ... tttggggcagCCGGAGCCAGAATTCCGACCACCGATGTCAGAAGTGGTTCAAGCACTGGTG
EST: gi|208142401|gb|GD935399.1|GD935399
EST:     CTCTTTGCGTTCAG                         CCGGAGCCAGAATTCCGACCACCGATGTCAGAAGTGGTTCAAGCACTGGTG
genomic: CTCTTTGCGTTCAGgtactgtcag ... tttggggcagCCGGAGCCAGAATTCCGACCACCGATGTCAGAAGTGGTTCAAGCACTGGTG
EST: gi|31471460|gb|CD413488.1|CD413488
EST:     CTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAG                         CCGGAGCCAGAATTCCGACCACCGATGTCAGAAGTGGTTCAAGCACTGGTG
genomic: CTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAGgtactgtcag ... tttggggcagCCGGAGCCAGAATTCCGACCACCGATGTCAGAAGTGGTTCAAGCACTGGTG
EST: gi|207848955|gb|GD820652.1|GD820652
EST:     CTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAG                         CCGGAGCCAGAATTCCGACCACCGATGTCAGAAGTGGTTCAAGCACTGGTG
genomic: CTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAGgtactgtcag ... tttggggcagCCGGAGCCAGAATTCCGACCACCGATGTCAGAAGTGGTTCAAGCACTGGTG
EST: gi|209706939|gb|BW683228.1|BW683228
EST:     CTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAG                         CCGGAGCCAGAATTCCGACCACCGAT-TCAGAAGTGGTTCAAGCACTGGTG
genomic: CTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAGgtactgtcag ... tttggggcagCCGGAGCCAGAATTCCGACCACCGATGTCAGAAGTGGTTCAAGCACTGGTG
EST: gi|209698334|gb|BW678065.1|BW678065
EST:     CTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAG                         CCGGAGCCAGAATTCCGACCACCGATGTCAGAAGTGGTTCAAGCACTGGTG
genomic: CTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAGgtactgtcag ... tttggggcagCCGGAGCCAGAATTCCGACCACCGATGTCAGAAGTGGTTCAAGCACTGGTG