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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACATTTGATAACAAGATGTTTGAGCTTGCAGCATATGAGTTGATGTCAGCCAATGATGCACCAGAAAGGGATCCAATGGACTGGTACGGACTTTGGAATgtatgctgaattactcttgattctgttctttgttgctattattattattaattatttaatgagtagttgagttactctgccttaccttatagtgttctct...

Basic information

species Glycine max
transcript GLYMA19G43320.4
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43320.4 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os07g31460.2 (Oryza sativa), 5'ss of exon 14
----------------AACATTTGATAACAAGATGTTTGAGCTTGCAGCATATGAGTTGATGTCAGCCAATGATGCACCAGAAAGGGATCCAATGGACTGGTACGGACTTTGGAATgtatgctgaattactcttgattctgttctttgttgctattattattattaattatttaatgagtagttgagttactctgccttaccttatagtgttctct
                 |   |||||  | | |  |  ||| | |   ||||||| ||||||||||| |||||||  ||||| ||||||||||||||||||||  |    |    ||| | || |  |||  ||  ||     | |     |  | || |  |   ||||       |  |    ||| ||  ||   ||    |           
GTTGGATAATTTACAAGATGCTTGATGGCCAAACTTGCGAGTTGGATTCATATGATTTGATGTCAGCTAATGATGTTCCAGAGAGGGATCCAATGGACTGgtatagcaactt---tgtttccttacataccttt--ttacacacataacaccgttgataagcaaccattacagtgccaaaatcctagtaaca-tgaagtatgcaac----------

upper sequence: GLYMA19G43320.4 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G474236_T01 (Zea mays), 5'ss of exon 7
----------------AACATTTGATAACAAGATGTTTGAGCTTGCAGCATATGAGTTGATGTCAGCCAATGATGCACCAGAAAGGGATCCAATGGACTGGTACGGACTTTGGAATgtatgctgaattactcttgattctgttctttgttgctattattattattaattatttaatgagtagttgagttactctgccttaccttatagtgttctct
                ||     |||  ||| |  |  ||| | |   ||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||  |   |||  ||  ||  | |       |  || ||  | |   |   |   || || ||     ||  ||| | |      |||| ||| ||||   || |||        
GTTGGCTGATTTATACAATGCAAGATGGCAAAAGTTGCGAGTTGGAGTCATATGATTTGATGTCAGCTAATGATGCTCCAGAGAGGGATCCAATGGACTGgtaaag---ttgagatagattgttagccttattcaatcctaatatgcttgaatggaat-ataatgtgccat--aataaatcccgatgttattcttcctt--tttgtag--------

upper sequence: GLYMA19G43320.4 (Glycine max), 5'ss of exon 15
lower sequence: Vv14s0030g01930.t01 (Vitis vinifera), 5'ss of exon 15
----------------AACATTTGATAACAAGATGTTTGAGCTTGCAGCATATGAGTTGATGTCAGCCAATGATGCACCAGAAAGGGATCCAATGGACTGGTACGGACTTTGGAATgtatgctgaattactcttgattctgttctttgttgctattattattattaattatttaatgagtagttgagttactctgccttaccttatagtgttctct
                 | | |  | || ||||||   || ||||  |||||||||||||||||||| |||||||| ||||| || ||||||||||| |||||||   ||  |||   ||  ||   ||   || ||  | ||||    || || |   ||| |   |  |||||  |  |  |     |    |       |||           
GTTGTTGGATTATATACAAAGTAAACAATAAGATGCAAGAACTTGTGGCATATGAGTTGATGTCAGCTAATGATGCTCCAGAGAGAGATCCAATGGATTGgtacgcttttctgaa-acataatg--ctatggtttatctttttctccaatgttacttcaattttatttcctttaacaaagaactcgaaaatgtagaa--gtttta-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299647|gb|FG987750.1|FG987750
EST:     CCAATGATGCACCAGAAAGGGATCCAATGGACTGGTACGGACTTTGGAAT                         GATTCTTGAAGGGAGTAGTGATGATGGGATCAGTTGGCAGGTTTTGGACAA
genomic: CCAATGATGCACCAGAAAGGGATCCAATGGACTGGTACGGACTTTGGAATgtatgctgaa ... actttctcagGATTCTTGAAGGGAGTAGTGATGATGGGATCAGTTGGCAGGTTTTGGACAA