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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGATTTAAATCCTCAATTAGCCTCTATAATTGAGTCTTGTTGGGCCAAgtgagtgcagatatttctttcatttgtagtctgcttcaatattctgatcaattttattgatatccttggttttctgcag

Basic information

species Glycine max
transcript GLYMA19G37570.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37570.2 (Glycine max), 5'ss of exon 15
lower sequence: Vv08s0007g03910.t01 (Vitis vinifera), 5'ss of exon 14
GTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGATTTAAATCCTCAATTAGCCTCTATAATTGAGTCTTGTTGGGCCAAgtgagtgcagatatttctttc---------atttgtagtctgcttcaatattctga---tcaattttattgatatccttggtttt-ctgcag--------
||||| ||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||| | || || ||||||||  | |||||||| |||||||||  | | |||  ||          | | ||||    | ||| || |       || |||| ||| |||       ||||  ||  |        
GTTGTAGCAGCTGTTGGTTTTAAGGGCAAAAGGCTTGAGATCCCACGTGATTTAAATCCTCAAGTGGCTTCCATAATTGAAGCATGTTGGGCAAAgtgagtgacggtttttgattatacaaaaaaaatagtaggtcccatcactaattgatctttccatttcattaataagaacttttttattgtggtattccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193408346|gb|FK371902.1|FK371902
EST:     AAATCCTCAATTAGCCTCTATAATTGAGTCTTGTTGGGCCAA                         TGAACCCTGGAAACG-CCTTCTTTTTCAAGTATAATGGATTCTTTGAAAGT
genomic: AAATCCTCAATTAGCCTCTATAATTGAGTCTTGTTGGGCCAAgtgagtgcag ... ttttctgcagTGAACCCTGGAAACGCCCTTCTTTTTCAAGTATAATGGATTCTTTGAAAGT
EST: gi|208141679|gb|GD940417.1|GD940417
EST:     ATCCTCAATTAGCCTCTATAATTGAGTCTTGTTGGGCCAA                         TGAACCCTGGAAACGCCCTTCTTTTTCAAGTATAATGGATTCTTTGAAAGT
genomic: ATCCTCAATTAGCCTCTATAATTGAGTCTTGTTGGGCCAAgtgagtgcag ... ttttctgcagTGAACCCTGGAAACGCCCTTCTTTTTCAAGTATAATGGATTCTTTGAAAGT