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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGACTCGACACTCAGTACAACTTCATCTAATAAACTTGCTGCATCTGTAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAGgtaagaggtgcccttttcaccaaaattgaaattctgactattgctatatacaatgttctggaacatgaaagaaatatgaacatatctatagattagctctggtttgttttctaatctttaatcagcatttctatttggagtagaaccttttcactagcactatattcactaggagttgttgatttccacag

Basic information

species Glycine max
transcript GLYMA19G30460.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308408|gb|FK002808.1|FK002808
EST:     TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAGG                         GCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
genomic: TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAGgtaagaggtg ... atttccacagGCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
EST: gi|207716705|gb|GD699719.1|GD699719
EST:     TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAG                         GCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
genomic: TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAGgtaagaggtg ... atttccacagGCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
EST: gi|193547063|gb|FK504066.1|FK504066
EST:     AATTATTTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAG                         GCAGTAAACTTTGGAGCAGCCGCTGAGTAGTCTTGACATTGATTTAAGTGG
genomic: AATTA-TTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAGgtaagaggtg ... atttccacagGCAGTAAACTTTGGAGCAGCCGCTGAG-AGTCTTGACATTGATTTAAGTGG
EST: gi|208274674|gb|GE069678.1|GE069678
EST:     TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAG                         GCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
genomic: TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAGgtaagaggtg ... atttccacagGCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
EST: gi|208206462|gb|GE007909.1|GE007909
EST:     AATTTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAG                         GCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
genomic: AA-TTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAGgtaagaggtg ... atttccacagGCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
EST: gi|193714790|gb|FK651553.1|FK651553
EST:     TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAG                         GCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGT
genomic: TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAGgtaagaggtg ... atttccacagGCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGT
EST: gi|193490417|gb|FK457670.1|FK457670
EST:     TAATTATTTGACAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAG                         GCAGTAAACTATGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAG
genomic: TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAGgtaagaggtg ... atttccacagGCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAG
EST: gi|193376409|gb|FK343110.1|FK343110
EST:     TAATTATTTGGCAAGATTCTTCAGATAAGAAAA-TTACCTAAGAATAAAG                         GCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
genomic: TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAGgtaagaggtg ... atttccacagGCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
EST: gi|192308407|gb|FK002807.1|FK002807
EST:     TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAGG                         GCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
genomic: TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAGgtaagaggtg ... atttccacagGCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
EST: gi|298173738|gb|HO017074.1|HO017074
EST:     TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAG                         GCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
genomic: TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAGgtaagaggtg ... atttccacagGCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
EST: gi|207813415|gb|GD783810.1|GD783810
EST:     TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAG                         GCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
genomic: TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAGgtaagaggtg ... atttccacagGCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
EST: gi|58020822|gb|CX707564.1|CX707564
EST:     TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAG                         GCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
genomic: TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAGgtaagaggtg ... atttccacagGCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGG
EST: gi|6724799|gb|AW309198.1|AW309198
EST:     TAATTATTTGGCAAGATTCTTCAGATAAGAGAAATTACCTAAGAATAAAG                         GCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGAT
genomic: TAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAGgtaagaggtg ... atttccacagGCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATTGACTCGACACTCAGTACAACTTCATCTAATAAACTTGCTGCATCTGTAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAGgtaagaggtgcccttttcaccaaaattgaaattctgactattgctatatacaatgttctggaacatgaaagaaatatgaacatatctatagattagctctggtttgttttctaatctttaatcagcatttctatttggagtagaaccttttcactagcactatattcactaggagttgttgatttccacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA