1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GTGGAGCTCCTGAACCTGATTGGGCATCGCTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTCCACATATCAAAggtagaccatacaagcccactctcttgatccttgtttatgttatatctgcaaattatttgtttacttttgaatataatttgatgctttacaatgagcatg...
species | Glycine max |
transcript | GLYMA18G51810.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTGCACATATCAAA GGTCAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTCATAAGEST: gi|21888134|gb|BQ741347.1|BQ741347
genomic: TGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTCCACATATCAAAggtagaccat ... tattgttacaGGTCAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTCATAAG
EST: TGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTCCACATATCAAA GGTCAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTCATAAGEST: gi|13251794|gb|BG362697.1|BG362697
genomic: TGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTCCACATATCAAAggtagaccat ... tattgttacaGGTCAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTCATAAG
EST: TGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTGCACATATCAAA GGTCAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTCATAAG
genomic: TGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTCCACATATCAAAggtagaccat ... tattgttacaGGTCAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTCATAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGAGCTCCTGAACCTGATTGGGCATCGCTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTCCACATATCAAAggtagaccatacaagcccactctcttgatccttgtttatgttatatctgcaaattatttgtttacttttgaatataatttgatgctttacaatgagcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccactc