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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATTGCTTCTGAAAATCAACCAGTGCGCTGGACCACTCCTCTTGGACTTCCTGTGGTGCAACCTTACCGTAAACTAGGAAAGCATATTgtgagtgcaatgggatttttttttaattacatctcttctttcaagttcctaggatttcaaggcattctttaggttaatagtctattattattattgttatatggttgcag

Basic information

species Glycine max
transcript GLYMA18G51160.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G51160.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv14s0083g00790.t01 (Vitis vinifera), 5'ss of exon 15
GTAATTGCTTCTGAAAATCAACCAGTGCGCTGGACCACTCCTCTTGGACTTCCTGTGGTGCAACCTTACCGTAAACTAGGAAAGCATATTgtgagtgcaatgggattt-----------ttttttaattacatctcttctttcaagttcctaggatttcaaggcattctttaggttaatagtctattattattattgttatat-ggttgcag
 ||||||| || |||||||| || ||| | ||||| || || |||||||||||||| |||||||||||||| ||| |||| | |||| | ||||||| | ||   | |                ||| |||   | |    |  | |   ||  |  ||||  ||  |  | |  |   | | || | |  |  |||||| || |  |||||
ATAATTGCATCGGAAAATCAGCCTGTGAGATGGACTACACCACTTGGACTTCCTGTAGTGCAACCTTACCGCAAATTAGGGAGGCATTTGgtgagtgtagtgatttgtagaaacacacacaaaataaataccattatatcctttaatgtttataaactcaaa-caggccattgcatgtcattttactttcttctttgttaaattgagtgcag

upper sequence: GLYMA18G51160.1 (Glycine max), 5'ss of exon 15
lower sequence: PP1S256_41V6.1 (Physcomitrella patens), 5'ss of exon 16
GTAATTGCTTCTGAAAATCAACCAGTGCGCTGGACCACTCCTCTTGGACTTCCTGTGGTGCAACCTTACCGTAAACTAGGAAAGCATATTgtgagtgcaatgggatttttttttaattacatctcttctttcaagttcctaggatttcaaggcattctttaggttaatagtctattattattattgttatatggttgcag
 | ||||| ||  |     || | |||   ||||| ||||||||||||||||| || |||||||||||||| || |  || |  ||| | ||  | |||  |  || | ||  |  |  | | |  | ||| | ||    |  ||| || ||   |   |   |  |||    ||     | |  || |||||       
ATCATTGCCTCAAATGGAGAAACTGTGAAGTGGACTACTCCTCTTGGACTTCCCGTTGTGCAACCTTACCGCAAGCCTGGCAGACATTTGgtatgggcag-gaaatatcttcattgtctcctttagt-tttgatgtctacaacattgcacggttcttggtgcatccatacagcatgtacttgaccgt-atatg-------