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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGCTGTGATGGCCAGCGATTTTGCCATTGCACAGTTCCGTTACCTTGCAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGAATATGCAAGgtataatgttttgttaactgcaatgtatgctagtgttactgtttatttgtaataacactcaaattggttattgcag

Basic information

species Glycine max
transcript GLYMA18G16990.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G16990.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os10g27220.2 (Oryza sativa), 5'ss of exon 1
GCAAGCTGTGATGGCCAGCGATTTTGCCATTGCACAGTTCCGTTACCTTGCAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGAATATGCAAGgtataatgttttgttaactgcaatgtatgctagtgttactgtttatttgtaataacactcaaattggttattgcag
||||||||| ||||| ||||||||||||||||| ||||| || || ||| | || ||||| ||||| |||||  |||||||||||||| || | |||||||||||  |||| |||   |||| ||||   | |||| |  ||| |        |  ||| |   |   | ||||||
GCAAGCTGTTATGGCTAGCGATTTTGCCATTGCTCAGTTTCGATATCTTACCGACTTGCTCCTTGTACATGGAAGATGGTCATATTTGAGATTGTGCAAGgtata--gtttagttctttgcagtgtagatttgtgt-atagttcaagaaactgatgactgatgctttctgttgcag

upper sequence: GLYMA18G16990.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G020553_T01 (Zea mays), 5'ss of exon 2
GCAAGCTGTGATGGCCAGCGATTTTGCCATTGCACAGTTCCGTTACCTTGCAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGAATATGCAAGgtataatgttttgttaactgcaatgtatgctagtgttactgtttatttgtaataacactcaaattggttattgcag
||||||||| ||||| || || ||||||||||||||||| ||||  ||| | |||||||||||||| ||||| |||||||| || ||| || | ||||||||||   ||| |  |  ||  | | ||  ||||  | |  ||| |   ||| | |   | | ||    | ||||||
GCAAGCTGTTATGGCTAGTGACTTTGCCATTGCACAGTTTCGTTTTCTTACTGATTTGCTTCTTGTACATGGACGATGGTCTTACTTGAGACTGTGCAAGgtatg--gttatagttgctcaactttaacctagcat-atagttcaaa-gtactgaatatgagatgttctgttgcag

upper sequence: GLYMA18G16990.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv00s0189g00030.t01 (Vitis vinifera), 5'ss of exon 22
GCAAGCTGTGATGGCCAGCGATTTTGCCATTGCACAGTTCCGTTACCTTGCAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGAATATGCAAGgtataatgttttgttaactgcaatgta----tgctagtgttactgtttatttgtaataacactcaaattggttattgcag---
|||||| || ||||| || |||||||| ||||| |||||||| |  ||| |||||||||||||||| ||||| || ||||||||| |  ||||||||||||| |||  |||   ||  | | |  ||    |     ||  | | ||| |  ||  | |||  |  | |  || ||   |   
GCAAGCAGTAATGGCTAGTGATTTTGCAATTGCTCAGTTCCGCTTTCTTACAGATTTGCTTCTTGTGCATGGACGGTGGTCATATCTCAGAATATGCAAGgtttaacttttctatatttccgacctaaaaatttctatgaaaatatttttcagtgtttacatactgaataattctttttgcag

upper sequence: GLYMA18G16990.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ31523 (Selaginella moellendorffii), 5'ss of exon 23
GCAAGCTGTGATGGCCAGCGATTTTGCCATTGCACAGTTCCGTTACCTTGCAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGAATATGCAAGgtataatgttttgttaactgcaatgtatgctagtgttactgtttatttgtaataacactcaaattggttattgcag
|||||| |||||||||||||||||||| || |||||||| || |  ||| | ||| |||| || || ||||| || ||||||||| | || |||   |||||     || | ||| |    ||||| |  |  | | | |  |    ||      |  |||               
GCAAGCAGTGATGGCCAGCGATTTTGCTATAGCACAGTTTCGATTTCTTACTGATCTGCTCCTGGTGCATGGACGGTGGTCATATATTCGGATAACAAAGgttc---gtatggttca----aatgtctcgttttatcagtcctctaatgctgccgctttcag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208322103|gb|GE124678.1|GE124678
EST:     CAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGAATATGCAAG                         GTTGTGATATACTTCTTTTACAAGAACCTCACCTTCACTCTTACTCAGTTT
genomic: CAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGAATATGCAAGgtataatgtt ... gttattgcagGTTGTGATATACTTCTTTTACAAGAACCTCACCTTCACTCTTACTCAGTTT