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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTCCAACAGATATCAGCTCTTCATTCAGATTTGTTGAGCCTTCAGTCGGACCTTGAGAATTCTCTTCCAGAAGACAGAAATAGGTGTATTAATGAACTgtaagttattataaaaatcaatatactgtaatttatgatatattcgtgagctataatttctttccatcaatagagacctttgtttgccgtagaagtatga...

Basic information

species Glycine max
transcript GLYMA17G15510.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193458529|gb|FK422050.1|FK422050
EST:     GACCTTGAGAATTCTCTTCCAGAAGACAGAAATAGGTGTATTAATGAACT                         GCGCAATCTTATTAAAAATCTGCAGAAACTGCTCTTTGCATCTTCAACAAC
genomic: GACCTTGAGAATTCTCTTCCAGAAGACAGAAATAGGTGTATTAATGAACTgtaagttatt ... gaatctgtagGCGCAATCTTATTAAAAATCTGCAGAAACTGCTCTTTGCATCTTCAACAAC
EST: gi|57574285|gb|CX547260.1|CX547260
EST:     GACCTTGAGAATTCTCTTCCAGAAGACAGAAATAGGTGTATTAATGAACT                         GCGCAATCTTATTAAAAATCTGCAGAAACTGCTCTTTGCATCTTCAACAAC
genomic: GACCTTGAGAATTCTCTTCCAGAAGACAGAAATAGGTGTATTAATGAACTgtaagttatt ... gaatctgtagGCGCAATCTTATTAAAAATCTGCAGAAACTGCTCTTTGCATCTTCAACAAC
EST: gi|58014978|gb|CX701720.1|CX701720
EST:     GACCTTGAGAATTCTCTTCCAGAAGACAGAAATAGGTGTATTAATGAACT                         GCGCAATCTTATTAAAAATCTGCAGAAACTGCTCTTTGCATCTTCAACAAC
genomic: GACCTTGAGAATTCTCTTCCAGAAGACAGAAATAGGTGTATTAATGAACTgtaagttatt ... gaatctgtagGCGCAATCTTATTAAAAATCTGCAGAAACTGCTCTTTGCATCTTCAACAAC
EST: gi|17401211|gb|BM177993.1|BM177993
EST:     AGAAGACAGAAATAGGTGTATTAATGAACT                         GCGCAATCTTATTAAAAATCTGCAGAAACTGCTCTTTGCATCTTCAACAAC
genomic: AGAAGACAGAAATAGGTGTATTAATGAACTgtaagttatt ... gaatctgtagGCGCAATCTTATTAAAAATCTGCAGAAACTGCTCTTTGCATCTTCAACAAC