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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTGCAGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAGgtagaaagtgtcaattgcaaaaaatgaagatattgtctggttgctaaccttttttttccttccctctttggctctag

Basic information

species Glycine max
transcript GLYMA17G11100.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G11100.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G07740.1 (Arabidopsis thaliana), 5'ss of exon 12
GATCTGCAGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAGgtagaaagtgtcaattgcaaaaaatgaagatattgtctggttgctaaccttttttttccttccctctttggctctag-----------------------------------------
|  |||| ||||||||||||||||| ||| | |  ||  | | ||| || |||||| ||||||| || ||||| || |||||||||||||||||||||   | || ||||   |||| |  | ||| | || |   || | |   || || |         | ||| ||  |                                         
GCGCTGCTGTTGGATTCAAGTTGGACAGTTTATCGAAATTAAGTGATACACGTGCTGCTAACAGCAAGATGACTCTCATGCATTATCTTTGCAAGgta---aatgacaatca-aaaagagcaggatctagttt--ctgatgaaggttattataaaaagtggtctggatcaggagagatacataattctgaaactctcatctttctttttccag

upper sequence: GLYMA17G11100.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G07650.1 (Arabidopsis thaliana), 5'ss of exon 23
GATCTGCAGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAGgtagaaagtgtcaattgcaaaaaatgaag---atattgtctggttgctaaccttttttttccttccctctttggctctag
|   ||| || |||||||||||| | ||| | || |   | |  |||||  ||||  ||||||| || ||||| || ||||||||||||||||||||| ||     |||| | ||| || ||||     ||| | |   ||| | | |        | ||  |  ||  | |   
GCAGTGCCGTGGGATTCAAGTTGAAAAGTTTATTGATATTAAGCGACACATGTGCACCTAACAGCAAGATGACTCTCATGCATTATCTTTGCAAGgtaaaa--ctacaatcg-aaagaacgaagcatgcattatatttatgcgatcatgaaaccatcctcttttattttcccag-

upper sequence: GLYMA17G11100.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv17s0000g06640.t01 (Vitis vinifera), 5'ss of exon 14
GATCTGCAGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAGgtagaaag--tgtcaattgcaaaaaatgaagatattgtctggttgctaaccttttttttccttc----cctctttggctctag------------------
| ||||| ||||||||||||||||| ||||||||||| |||||||| || ||||| |||||||| || |||||||| |||||||||||||| ||||||    |  ||   |||        |   | |    ||||    |    |||| |  | |  |      ||||   |||||                   
GTTCTGCGGTTGGATTCAAGTTGGACAGTCTTTTAAAACTCACTGATACACGTGCCTCTAACAGCAAGATGACACTTATGCATTATCTTTGTAAGgtaaggtggttgcatattatgtttccttgtggtgcc-tctgaaatcaggtctttctggtgcagcagaatatcttatactctaaatttctttctggtgcaac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9903210|gb|BE612178.1|BE612178
EST:     ATCTTTGCAAG                         GTCCTGGCTGATAAATCGCCCAGGCTCCTTGATTTCCACCTAGACCTTGTT
genomic: ATCTTTGCAAGgtagaaagtg ... ttggctctagGTCCTGGCTGATAAATCGCCCAGGCTCCTTGATTTCCACCTAGACCTTGTT
EST: gi|192304259|gb|FG993543.1|FG993543
EST:     ACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAG                         GTCCTGGCCGATAAATCGCCCAGGCTCCTTGATTTCCACCTAGACCTTGTT
genomic: ACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAGgtagaaagtg ... ttggctctagGTCCTGGCTGATAAATCGCCCAGGCTCCTTGATTTCCACCTAGACCTTGTT