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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAAGATGCAGTGTTAACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTACATCTGGCTTATGTCCTGTTTGTAGgtattatcaagcttctccattagaattttggatatcttctatttaactttgattgaaggaagttcaaaattgtctttattgcagtagttttcagatgaatcttggttatggtacaaattcctaacaatattgtttattttacag

Basic information

species Glycine max
transcript GLYMA17G05390.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05390.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os02g32570.1 (Oryza sativa), 5'ss of exon 15
TTGAAGATGCAGTGTTAACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTACATCTGGCTTATGTCCTGTTTGTAGgtattatcaagcttctccattagaattttggatatcttctatttaactttgattgaaggaagttcaaaattgtcttt--attgcagtagttttcagatgaatcttggttatggtacaaattcctaacaatattgtttattttacag
|||| ||||| || || || || ||||||||||| |||||||| ||||| |||||||| |||||||| | |||  || | ||| | |||||||| ||||||||  || | ||| | |  ||      ||   |||||   | ||   |||  |||    |   | |   || |||||  ||| || |    | |||                                                  
TTGAGGATGCTGTATTGACTCCCTGTGCTCACCGTTTATGCCGAGAATGTCTCTTGTCTAGTTGGCGGAGTGCATCAGCAGGCCTTTGTCCTGTCTGTAGgtag-attatgct-cactgtt----ccttatttatctctgaattttgtttacttggtatattctgatctttatcttttgattccactg--ctacag--------------------------------------------------

upper sequence: GLYMA17G05390.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G22750.1 (Arabidopsis thaliana), 5'ss of exon 15
TTGAAGATGCAGTGTTAACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTACATCTGGCTTATGTCCTGTTTGTAGgtattatcaagcttctccattagaattttggatatcttctatttaactttgattgaaggaagt-tcaaaattgtctttattgcagtagttttcagatgaatcttggttatggtacaaattcctaacaatattgtttattttacag
|||| ||||| || |||||||| ||||||||  | ||||| || || || |||||| |||||||| ||||| |||| ||||| ||||||||||| |||||||||  | ||| |  ||| |  || |  | | | |||||| ||     ||||||  |   ||| ||  | |    | || |   | |  |     ||||    | ||| |  | ||                             
TTGAGGATGCTGTATTAACGCCATGTGCTCATAGATTATGTCGTGAGTGTCTCTTGGCAAGTTGGAGAAATTCTACTTCTGGGTTATGTCCTGTGTGTAGgtatcttgaagttgttcc-tgcgattactagttttcttctgttg----ttgattccaatgagtgtctgagtaaggtctaatttggcaaataatgaatgatgaatcgttttt-ttcag----------------------------

upper sequence: GLYMA17G05390.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 15
TTGAAGATGCAGTGTTAACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTACATCTGGCTTATGTCCTGTTTGTAGgtattatcaagcttct-ccattagaatt-ttggatatcttctatttaactttgattgaaggaagttcaaaattgtctttattgcagtagttttcagatgaatcttggttatggtacaaattcctaacaatattgtttattttacag
|||||||||||||||| || ||||||||||| || |||||||| || || |||||| | |||||||||||| | || ||||| || || ||||||||||||||   |  || |  |  || | |  || ||   |  ||| || |  | |||  ||         | | | ||   |||  |    |  | | |   | |   | |  | |  ||| |  |   ||||  ||   |   |||||||
TTGAAGATGCAGTGTTGACTCCTTGTGCTCATCGTTTATGCCGAGAGTGTCTCTTGGCTAGTTGGCGAAATCCCACTTCTGGATTTTGCCCTGTTTGTAGgtaccttttagttaatgtcagtggttttattatttggcttttaatgcattttatttttgtactacttatattttatttttgttttttgttgtcctttttataatggagttttatactatctttgaacatgatctctctctttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193642872|gb|FK587760.1|FK587760
EST:     TCTGGCTTATGTCCTG-TT-T--                         GAAAACAATCAGCAGGCTGGATCTTATCACTGCCCCTACTGAGAATCGGTT
genomic: TCTGGCTTATGTCCTGTTTGTAGgtattatcaa ... tattttacagGAAAACAATCAGCAGGCTGGATCTTATCACTGCCCCTACTGAGAATCGGTT
EST: gi|193699197|gb|FK637622.1|FK637622
EST:     CTCTTGTCAAGTTGGCGAAATGCTACATCTGGCTTATGACCTGTTTGTAG                         GAAAACAATCAGCAGGCTGGATCTTATCACTGCCCCTACTGAGAATCGGTT
genomic: CTCTTGTCAAGTTGGCGAAATGCTACATCTGGCTTATGTCCTGTTTGTAGgtattatcaa ... tattttacagGAAAACAATCAGCAGGCTGGATCTTATCACTGCCCCTACTGAGAATCGGTT