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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGAATCACTAGCTGGTCTTCGTCCTACATTTGAGAGAATTTTAGCAGATGTTCATGAGCGGTTGACATTTCGTGCTCGGACTCATATACGGGATGAGgtaggttacttattggtttttttattttattattattttcatgttctgacttagttatttgttttaatttagttccttgtggtgatcgttataataatttaaatttcttttctaatatcttggtttcttgaaaccttatttctttatcttattacag

Basic information

species Glycine max
transcript GLYMA17G04990.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os08g34970.1 (Oryza sativa), 5'ss of exon 15
GAGTGAATCACTAGCTGGTCTTCGTCCTACATTTGAGAGAATTTTAGCAGATGTTCATGAGCGGTTGACATTTCGTGCTCGGACTCATATACGGGATGAGgtaggttacttattggtttttttattttattattattttcatgttctgactt-agtta-tttgttttaatttagttccttgtggtgatcgttataataatttaaatttcttttctaatatcttggtttcttgaaaccttatttctttatcttattacag
  | |||||| ||||||| ||||| || | |||  | || ||  | ||||| ||||||||||||||| | ||| |||||||||||||||| || || ||||||     ||  ||    | |     |||||  |   |||||||| |   || ||| |   |||| |  |||   | |  ||||||    ||    | ||||                                                         
AGGAGAATCAGTAGCTGGGCTTCGACCCATATTGCAAAGGATACTTGCAGACGTTCATGAGCGGTTGGCCTTTTGTGCTCGGACTCATATTCGTGAGGAGgta-----ctatttaaaatatgccccttattggtgacttcatgtttttttttcagtcagcatgttctcgtttgagtac--gtggtgcatatttcgttcatttgttcg----------------------------------------------------

upper sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM5G825854_T01 (Zea mays), 5'ss of exon 15
GAGTGAATCACTAGCTGGTCTTCGTCCTACATTTGAGAGAATTTTAGCAGATGTTCATGAGCGGTTGACATTTCGTGCTCGGACTCATATACGGGATGAGgtaggttacttattggtttttttattttattattattttcatgttctgacttagttatttgttttaatttagttccttgtggtgatcgttataataatttaaatttcttttctaatatcttggtttcttgaaaccttatttctttatcttattacag
  |||||||| |||| ||||| ||||| | |||  | || ||  | |||||||||||||||||| |  ||||| |||||||||||||||| || || |||||||  | ||     || | |  || |  | | || |      ||||| |||     ||||||  | | || ||  || ||| |   | ||||     | | | || ||   ||||||                                       
CGGTGAATCAGTAGCCGGTCTCCGTCCAATATTGCAAAGGATACTTGCAGATGTTCATGAGCGGCTAGCATTTTGTGCTCGGACTCATATCCGTGAAGAGgtagtgttct-----gtgtgtccatatgttgactaatg----attctgtctt-----tttgtt--agtatacttt-ttatgg-ggctgctatatattatgagaattgttccttaatat---------------------------------------

upper sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 16
GAGTGAATCACTAGCTGGTCTTCGTCCTACATTTGAGAGAATTTTAGCAGATGTTCATGAGCGGTTGACATTTCGTGCTCGGACTCATATACGGGATGAGgtaggttacttattggtttttttattttattattattttcatgttctgacttagttatttgttttaatttagttccttgtggtgatcgttataataatttaaatttcttttctaatatcttggtttcttgaaaccttatttctttatcttattacag
| |||||||| |||||||  | || || |||||  | |||||| |||| |||||||||||||| ||||| ||||||||||| || ||||| || ||||||||  ||     | |      |  | ||| | | ||| | ||  | ||   |   ||||||      |||   | |||| || || |  || || |  | |                                                         
GGGTGAATCATTAGCTGGATTACGCCCCACATTGCATAGAATTCTAGCCGATGTTCATGAGCGATTGACTTTTCGTGCTCGAACACATATTCGTGATGAGgtgtgtattccactt-caaatgcactttgtcaatatctgcacttactttatcttttatttacacagatt-gctcccttttgttgttaattctagttgtattc-------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10847438|gb|BF070125.1|BF070125
EST:     ATGTTCATGAGCGGTTGACATTTCGTGCTCGGACTCATATACGGGATGAG                         ATAGCGAATTACATGCCTACTAATGAAGACTTGGACTACCCTGAAAAGCTG
genomic: ATGTTCATGAGCGGTTGACATTTCGTGCTCGGACTCATATACGGGATGAGgtaggttact ... cttattacagATAGCGAATTACATGCCTACTAATGAAGACTTGGACTACCCTGAAAAGCTG