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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGGTTTTCTATCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAAgtatgtggtttagtggttacttattgatgaccctgatctctattttatcacattactcttttgatactgaactgtttaaatttattattgcag

Basic information

species Glycine max
transcript GLYMA17G04580.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04580.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G48960.1 (Arabidopsis thaliana), 5'ss of exon 15
GTGGGGTTTTCTATCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAAgtatgtgg---tttagtggttacttattgatgaccc-tgatctctattttatcacattactcttttgatactgaactgtttaaatttattattgcag
|||||| || || || || || ||  ||||||||||||||||||||||||||||||| || |||||| |     | |  |    | ||     | || | | | ||| |    | | ||  | |      | ||| |  |  || ||  | |  || |||
GTGGGGCTTCCTCTCACGCGCGGGTTTGTGGGATAAAAGCCACTTGATGAGACAAATCGAAAAgtatttatgcctcttctctgcatttccgagtaactcataagctcaaaccaagctcac-atttaaactacacttactttcttcaaaat-tggtttcag

upper sequence: GLYMA17G04580.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv05s0020g00880.t01 (Vitis vinifera), 5'ss of exon 15
GTGGGGTTTTCTATCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAAgtatgtggtttagtggttacttattgatgaccctgatctctattttatcaca-ttactcttttgatactgaactgtttaaatttat-----tattgcag----------------
|||||| ||||| || ||||| || || ||||||||||| |||||||||||||||||||| ||||||||| |||  |  ||  |||| |    |  |  |   ||| |      |  ||  |||   | ||| |    | ||  |||||       || ||                 
GTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAAgtatgtgcttt--tccttcattat-gccttctttttttcttatgtaggagtaactaaacttcataaactaagggttctacctttatatgatccttacaatatcttccaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335476|gb|CO979342.1|CO979342
EST:     TCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAA                         ATATGCTGATATTTATACATCTAGGGTGTCAAATTTTTTGTATTATACACC
genomic: TCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAAgtatgtggtt ... attattgcagATATGCTGATATTTATACATCTAGGGTGTCAAATTTTTTGTATTATACACC
EST: gi|298169844|gb|HO018468.1|HO018468
EST:     TCTCGTGCTGGGCTGTGGGATAAAAGCCACCTGATGAGACAAATTGAGAA                         ATATGCTGATATTTATACATCTAGGGTGTCAAATTTTT-GTATTATACACC
genomic: TCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAAgtatgtggtt ... attattgcagATATGCTGATATTTATACATCTAGGGTGTCAAATTTTTTGTATTATACACC
EST: gi|58022071|gb|CX708812.1|CX708812
EST:     TCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAA                         ATATGCTGATATTTATACATCTAGGGTGTCAAATTTTTTGTATTATACACC
genomic: TCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAAgtatgtggtt ... attattgcagATATGCTGATATTTATACATCTAGGGTGTCAAATTTTTTGTATTATACACC