1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ATATATAATTAGTCATCTTAGGAATGAGATGCCGGCAATGATGGGCAAAGCTAAGACTCAACAAAGGCTTATAGATAATCTTGAAGACGAATTTAGAAAGgtttcctccttccccttcttctcccttatttcccttaatttcttaattcttatcatatctaatcttgctaaacag
species | Glycine max |
transcript | GLYMA17G01310.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CTAAGACTCAACAAAGGCTTATAGATAATCTTGAAGACGAATTTAGAAAG GTTCAAAGGGAGTATCATCTACCAGCTGGTGACTTTCCCAACTGTAGAACAEST: gi|207763081|gb|GD731212.1|GD731212
genomic: CTAAGACTCAACAAAGGCTTATAGATAATCTTGAAGACGAATTTAGAAAGgtttcctcct ... tgctaaacagGTTCAAAGGGAGTATCATCTACCAGCTGGTGACTTTCCCAA-TGTAGAACA
EST: CTAAGACTCAACAAAGGCTTATAGATAATCTTGAAGACGAATTTAGAAAG GTTCAAAGGGAGTATCATCTACCAGCTGGTGACTTTCCCAATGTAGAACACEST: gi|208246799|gb|GE043935.1|GE043935
genomic: CTAAGACTCAACAAAGGCTTATAGATAATCTTGAAGACGAATTTAGAAAGgtttcctcct ... tgctaaacagGTTCAAAGGGAGTATCATCTACCAGCTGGTGACTTTCCCAATGTAGAACAC
EST: CTAAGACTCAACAAAGGCTTATAGATAATCTTGAAGACGAGTTTAGAAAG GTTCAAAGGGAGTATCATEST: gi|208132357|gb|GD929870.1|GD929870
genomic: CTAAGACTCAACAAAGGCTTATAGATAATCTTGAAGACGAATTTAGAAAGgtttcctcct ... tgctaaacagGTTCAAAGGGAGTATCAT
EST: ATCTTGAAGACGAATTTAGAAAG GTTCAAAGGGAGTATCATCTACCAGCTGGTGACTTTCCCAATGTAGAGCAC
genomic: ATCTTGAAGACGAATTTAGAAAGgtttcctcct ... tgctaaacagGTTCAAAGGGAGTATCATCTACCAGCTGGTGACTTTCCCAATGTAGAACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATATAATTAGTCATCTTAGGAATGAGATGCCGGCAATGATGGGCAAAGCTAAGACTCAACAAAGGCTTATAGATAATCTTGAAGACGAATTTAGAAAGgtttcctccttccccttcttctcccttatttcccttaatttcttaattcttatcatatctaatcttgctaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA