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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGAATTAAGAGCAAGAAATCATTGAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAAgtaagcacttttgtccaatattttttggcactcatttcatgggaggattaaaaaaaaacagaacttaaatatttatatgggtcctataataaccactgtc...

Basic information

species Glycine max
transcript GLYMA16G17580.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193583649|gb|FK541099.1|FK541099
EST:     GAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAA                         CTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
genomic: GAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAAgtaagcactt ... tgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
EST: gi|207834817|gb|GD807250.1|GD807250
EST:     GAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAA                         CTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
genomic: GAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAAgtaagcactt ... tgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
EST: gi|254345558|gb|GR851720.1|GR851720
EST:     GAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAA                         CTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
genomic: GAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAAgtaagcactt ... tgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
EST: gi|208317251|gb|GE111902.1|GE111902
EST:     AAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAA                         CTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
genomic: AAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAAgtaagcactt ... tgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
EST: gi|208079945|gb|GD874159.1|GD874159
EST:     CTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAA                         CTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
genomic: CTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAAgtaagcactt ... tgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
EST: gi|254345557|gb|GR851719.1|GR851719
EST:     GAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAA                         CTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
genomic: GAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAAgtaagcactt ... tgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
EST: gi|193729034|gb|FK663882.1|FK663882
EST:     AATCAAAAATATCGATTACCAGGAAAAGGCAGCCCAA                         CTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
genomic: AATC-AAAATATCGATTACCAGGAAAAGGCAGCCCAAgtaagcactt ... tgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
EST: gi|208134784|gb|GD932241.1|GD932241
EST:     ACTCGACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAA                         CTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
genomic: ACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAAgtaagcactt ... tgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA