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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACAGGCACCTATTGTTAATAATCCTGCTTTTTGGGAGAGGGTTGGTCTTGAACCATTTGGTACTGATACTCTGTTCTTTGCATTTTATTATCAACAGgtacctgaactttctctgtgattaatattattgtgtttttctgtcatgtgggcttatatccatttttttctgcagaatacttaccaacaatatttggctgcaaag

Basic information

species Glycine max
transcript GLYMA16G04690.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04690.2 (Glycine max), 5'ss of exon 15
lower sequence: Vv08s0007g07570.t01 (Vitis vinifera), 5'ss of exon 14
AGTACAGGCACCTATTGTTAATAATCCTGCTTTTTGGGAGAGGGTTGGTCTTGAACCATTTGGTACTGATACTCTGTTCTTTGCATTTTATTATCAACAGgtacc-tgaactttctctgtgattaatattattgtgtttttctgtcatgtgggcttatatccatttttttctgcagaatacttaccaacaatatttggctgcaaag
|||||||||||| ||||| ||||||||||| || |||||  || | ||||||||  | ||||| ||||| || ||||||||||||||||| ||||| ||||||   | | |||||| |   | |  | | || ||||||  |  | ||||||  |||| |  |   | ||||  ||   | ||||   |  ||             
AGTACAGGCACCCATTGTCAATAATCCTGCCTTCTGGGAACGGCTGGGTCTTGATACTTTTGGCACTGACACCCTGTTCTTTGCATTTTACTATCAGCAGgtattgttagctttctgtaacaatcct-tcatagtgttta-ccattatgtgg--ttatcttgagcatattctcaagcgca-ttactttctgtag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58015793|gb|CX702535.1|CX702535
EST:     TTGAACCATTTGGTACTGATACTCTGTTCTTTGCATTTCATTATCAACAG                         GAGTTAAAGAAGCAGTCTTGGAGATACCACCGAAAGTATAACACATGGTTT
genomic: TTGAACCATTTGGTACTGATACTCTGTTCTTTGCATTTTATTATCAACAGgtacctgaac ... ggctgcaaagGAGTTAAAGAAGCAGTCTTGGAGATACCACCGAAAGTATAACACATGGTTT
EST: gi|57574010|gb|CX546985.1|CX546985
EST:     TTGAACCATTTGGTACTGATACTCTGTTCTTTGCATTTCATTATCAACAG                         GAGTTAAAGAAGCAGTCTTGGAGATACCACCGAAAGTATAACACATGGTTT
genomic: TTGAACCATTTGGTACTGATACTCTGTTCTTTGCATTTTATTATCAACAGgtacctgaac ... ggctgcaaagGAGTTAAAGAAGCAGTCTTGGAGATACCACCGAAAGTATAACACATGGTTT