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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCGATGCTTTGGCTAAAATGGTTGATCCTGCATTGGAAGGACTATACCCTGTGAAGTCCCTTTCTCGATTTGCGGATGTTATTGCTCTATGCGTTCAGgtaatgtcagtcgtgtttcatcttaaattttattgttttagtgaataggcagtaaatcacttacttgttttgggcgtctatttgaatttttacacaataattcccaagtgctaagttcaagccttgtggcacccttggggatgaacagcatttacatgcattatcatttattctaattttacttttggggcag

Basic information

species Glycine max
transcript GLYMA16G01790.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G01790.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G004572_T01 (Zea mays), 5'ss of exon 15
TATCGATGCTTTGGCTAAAATGGTTGATCCTGCATTGGAAGGACTATACCCTGTGAAGTCCCTTTCTCGATTTGCGGATGTTATTGCTCTATGCGTTCAGgtaatgtcagtcgtgtttcatcttaaattttattgttttagtgaataggcagtaaatcacttacttgttttgggcgtctatttgaatttttacacaataattcccaagtgctaagttcaagccttgtggcacccttggggatgaacagcatttacatgcattatcatttattctaattttacttttggggcag
 || || || ||||   | ||||||||||| ||  |  | || || ||||| |  || |||||||| || |||||||||||||||||||| || || ||||||    |  | | |   ||  |  ||     ||  | ||     ||  ||  |||  ||   |  ||   |   |         | |||  |    | ||                                                                                            
CATTGACGCCTTGGACCAGATGGTTGATCCGGCGCTCAAGGGTCTTTACCCCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAGgtatgaactctagcgcc-cacatacaacgcagttagtata-catctatacatcaaaataccagccagtagcgaa-gctagcaaataatttatcggggtcatca------------------------------------------------------------------------------------------

upper sequence: GLYMA16G01790.1 (Glycine max), 5'ss of exon 15
lower sequence: AT3G14350.3 (Arabidopsis thaliana), 5'ss of exon 16
TATCGATGCTTTGGCTAAAATGGTTGATCCTGCATTGGAAGGACTATACCCTGTGAAGTCCCTTTCTCGATTTGCGGATGTTATTGCTCTATGCGTTCAGgtaatgtcagtcgtgtttcatcttaaattttattgttttagtgaataggcagtaaatcacttacttgttttgggcgtctatttgaatttttacacaataattcccaagtgctaagttcaagccttgtggcacccttggggatgaacagcatttacatgcattatcatttattctaattttacttttggggcag
 || ||||||||||  |||||||||||||| ||  |  |||| |||||||| || || ||||| || |||||||| |||||||| || || ||||| |||||||  |||    | | | ||    ||| | ||  | | |   |||      | |||    || ||||| |     ||| ||  |                                                                                                            
CATTGATGCTTTGGGCAAAATGGTTGATCCAGCTCTCAAAGGGCTATACCCGGTTAAATCCCTCTCCCGATTTGCAGATGTTATCGCCCTTTGCGTCCAGgtaa--tcatctatatattat----aatgtgatgatctgaacaaatgaaatctgaat-gtata-ttgttcttttaatctgttacag-----------------------------------------------------------------------------------------------------------

upper sequence: GLYMA16G01790.1 (Glycine max), 5'ss of exon 15
lower sequence: AT1G53730.2 (Arabidopsis thaliana), 5'ss of exon 15
TATCGATGCTTTGGCTAAAATGGTTGATCCTGCATTGGAAGGACTATACCCTGTGAAGTCCCTTTCTCGATTTGCGGATGTTATTGCTCTATGCGTTCAGgtaatgtcagtcgtgtttcatcttaaattttattgttttagtgaataggcagtaaatcacttacttgttttgggcgtctatttgaatttttacacaataattcccaagtgctaagttcaagccttgtggcacccttggggatgaacagcatttacatgcattatcatttattctaattttacttttggggcag
 || |||||||| || |||||||||||||| ||  |  |||| || || ||||| || ||||||||||||||||| |||||||| ||||| || || |||||||    | | ||    ||  |  | | ||     || |          || || ||  |||||  |||||||       |||  | || |||                                                                                                   
CATTGATGCTTTAGCCAAAATGGTTGATCCAGCTCTTAAAGGGCTTTATCCTGTCAAATCCCTTTCTCGATTTGCAGATGTTATCGCTCTCTGTGTCCAGgtaa-actaatggt--cacaaatcgagtcttgcaaattca----------agaaagtcttttactgattttgggt-----cttgtttcttaacag--------------------------------------------------------------------------------------------------

upper sequence: GLYMA16G01790.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv09s0002g00150.t01 (Vitis vinifera), 5'ss of exon 15
TATCGATGCTTTGGCTAAAATGGTTGATCCTGCATTGGAAGGACTATACCCTGTGAAGTCCCTTTCTCGATTTGCGGATGTTATTGCTCTATGCGTTCAGgtaatgtcagtcgtgtttcatcttaaattttattgttttagtgaataggcagtaaatcacttacttgttttgggcgtctatt-tgaatttttacacaataattcccaagtgctaagttcaagccttgtggcacccttggggatgaacagcatttacatgcattatcatttattctaattttacttttggggcag
 ||||||||| ||||||||||||||||||| ||| |  |||| || ||||| || ||||| || ||  | || || ||||| |||||||| || || ||||||| ||       ||||  |  |||| |  |  ||     || ||          |||    | |||||  |  |   ||  | ||  | |   |  | |||   |  |  ||   ||  |  ||| ||||                                                              
CATCGATGCTCTGGCTAAAATGGTTGATCCGGCACTCAAAGGGCTCTACCCAGTCAAGTCTCTCTCCAGGTTCGCTGATGTGATTGCTCTGTGTGTCCAGgtaaggt-------gtttagt--taaagtaaagagtgcagatggat----------tcatcatcctgtttcagctgctgatggtaaagatctgttctctgattttaatatttta---tc--gttttg-ggcag-------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193544246|gb|FK501171.1|FK501171
EST:     TTGCGGATGTTATTGCTCTATGCGTTCAG                         CCGGAGCCGGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCACTGGTT
genomic: TTGCGGATGTTATTGCTCTATGCGTTCAGgtaatgtcag ... tttggggcagCCGGAGCCGGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCACTGGTT
EST: gi|23732744|gb|BU764545.1|BU764545
EST:     CTGTGAAGTCCCTTTCTCGATTTGCGGATGTTATTGCTCTATGCGTTCAG                         CCGGAGCCGGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCGCTGGT
genomic: CTGTGAAGTCCCTTTCTCGATTTGCGGATGTTATTGCTCTATGCGTTCAGgtaatgtcag ... tttggggcagCCGGAGCCGGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCACTGGT
EST: gi|213607438|gb|DB978403.1|DB978403
EST:     CTGTGAAGTCCCTTTCTCGATTTGCGGATGTTATTGCTCTATGCGTTCAG                         CCGGAGCCGGAATTCCGA-CATCCTATGTCAGAAGTGGTTCAAGCACTGGT
genomic: CTGTGAAGTCCCTTTCTCGATTTGCGGATGTTATTGCTCTATGCGTTCAGgtaatgtcag ... tttggggcagCCGGAGCCGGAATTCCGACCA-CCTATGTCAGAAGTGGTTCAAGCACTGGT
EST: gi|4293506|gb|AI437915.1|AI437915
EST:     CTGTGAAGTCCCTTTCTCGATTTGCGGATGTTATTGCTCTATGCGTTCAG                         CCGGAGCCGGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCACTGGTT
genomic: CTGTGAAGTCCCTTTCTCGATTTGCGGATGTTATTGCTCTATGCGTTCAGgtaatgtcag ... tttggggcagCCGGAGCCGGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCACTGGTT
EST: gi|15664525|gb|BI701896.1|BI701896
EST:     CTGTGAAGTCCCTTTCTCGATTTGCGGATGTTATTGCTCTATGCGTTCAG                         CCGGAGCCGGAATTCCGACCACCTATGTCAGAA
genomic: CTGTGAAGTCCCTTTCTCGATTTGCGGATGTTATTGCTCTATGCGTTCAGgtaatgtcag ... tttggggcagCCGGAGCCGGAATTCCGACCACCTATGTCAGAA
EST: gi|254326943|gb|GR836552.1|GR836552
EST:     CTGTGAAGTCCCTTTCTCGATTTGCGGATGTTATTGCTCTATGCGTTCAG                         CCGGAGCCGGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCACTGGTT
genomic: CTGTGAAGTCCCTTTCTCGATTTGCGGATGTTATTGCTCTATGCGTTCAGgtaatgtcag ... tttggggcagCCGGAGCCGGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCACTGGTT