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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAAgtaagttaatgtcacatttttcagcattcatatatttgttccttcagtgttttggagttcattcttctggggccatcctctgtctcttttgcag

Basic information

species Glycine max
transcript GLYMA16G01660.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G01660.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G12370.1 (Arabidopsis thaliana), 5'ss of exon 16
CCTGCTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAAgtaagttaat-gtcacatttttcag-cattcatatatttgttccttcagtgttttggagttcattcttctggggccatcctctgtctcttttgcag
|| || ||||||||| || ||||||||||  | |||||||||||||||||||| ||| | |  |  | | ||| |  || |||||||||   |    ||   |   |   |||||| | |                              
CCAGCCACACTTGCAGCCAATGTTAAAGCTATATTTACTTGCCTGCTAGACCAGgtatgctgttcatgagattctagagtcattcatattaatagagctgatgcaatgatgagttcttgcag----------------------------

upper sequence: GLYMA16G01660.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv15s0046g02200.t01 (Vitis vinifera), 5'ss of exon 15
CCTGCTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAAgtaagttaatgtcacatttttcagcattcatatatttgttcc--ttcagtgttttggagttcattcttctggggcc-atcctctgtctcttttgcag
||| |||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||||  |       | |||  ||||    | ||   |    ||  | |  ||   ||    | |  |||   | |   | | | | |||| |||
CCTACTACCCTTGCAACCAATGTAAAAGCTGTGTTTACTTGCCTGCTAGACCAAgtaagttggttgatttctcttccacattgtggttttcagttgaatttggggcattcatgtgatctgtcatggattctaagatatttttatttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208049961|gb|GD846248.1|GD846248
EST:     CTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAA                         GTTAGTCAATATATAGCTGATGGGCTTGAACGGGCAAGAGACAGCCTGACT
genomic: CTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAAgtaagttaat ... tcttttgcagGTTAGTCAATATATAGCTGATGGGCTTGAACGGGCAAGAGACAGCCTGACT
EST: gi|192329176|gb|FK019763.1|FK019763
EST:     CTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAA                         GTTAGTCAATATATAGCAGATGGGCTTGAACGGGCGAGAGACAGCCTGACT
genomic: CTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAAgtaagttaat ... tcttttgcagGTTAGTCAATATATAGCTGATGGGCTTGAACGGGCAAGAGACAGCCTGACT
EST: gi|15287423|gb|BI471314.1|BI471314
EST:     CTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAA                         GTTAGTCAATATATAGCTGATGGGCTTGAACGGGCAAGAGACAGCCTGACT
genomic: CTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAAgtaagttaat ... tcttttgcagGTTAGTCAATATATAGCTGATGGGCTTGAACGGGCAAGAGACAGCCTGACT
EST: gi|208340156|gb|GE133198.1|GE133198
EST:     CTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAA                         GTTAGTCAATATATAGCTGATGGGCTTGAACGGGCAAGAGACAGCCTGACT
genomic: CTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAAgtaagttaat ... tcttttgcagGTTAGTCAATATATAGCTGATGGGCTTGAACGGGCAAGAGACAGCCTGACT