Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTACGATGGATCAGATCAATAGTTGCAGAGTTTGGAACTCCTAACATAAGTACAGAACAATTGGCTGACTACATTAATAAAACTTTGAGTAGGGGCCAGgtaatatcataactaatatgaatctatgatgctgaatgaagtttttgaagccttttattttttactttagcttatttgtttgtctttactttttttttag...

Basic information

species Glycine max
transcript GLYMA15G42300.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10847452|gb|BF070139.1|BF070139
EST:     GTACAGAACAATTGGCTGACTACATTAATAAAACTTTGAGTAGGGGCCAG                         GTTGTGCCTGGATATGGACATGGGGTTTTACGCCAGACAGATCCAAGATAC
genomic: GTACAGAACAATTGGCTGACTACATTAATAAAACTTTGAGTAGGGGCCAGgtaatatcat ... ggatttgcagGTTGTGCCTGGATATGGACATGGGGTTTTACGCCAGACAGATCCAAGATAC
EST: gi|8825797|gb|BE209527.1|BE209527
EST:     GTACAGAACAATTGGCTGACTACATTAATAAAACTTTGAGTAGGGGCCAG                         GTTGTGCCTGGATATGGACATGGTGTTTTACGCCAGACAGATCCAAGATAC
genomic: GTACAGAACAATTGGCTGACTACATTAATAAAACTTTGAGTAGGGGCCAGgtaatatcat ... ggatttgcagGTTGTGCCTGGATATGGACATGGGGTTTTACGCCAGACAGATCCAAGATAC
EST: gi|192324528|gb|FK016449.1|FK016449
EST:     GTACAGAACAATTGGCCGACTACATTAATAAAACTTTGAGTAGGGGCCAG                         GTTGTGCCTGGATATGGACATGGGGTTTTACGCCAGACAGATCCAAGATAC
genomic: GTACAGAACAATTGGCTGACTACATTAATAAAACTTTGAGTAGGGGCCAGgtaatatcat ... ggatttgcagGTTGTGCCTGGATATGGACATGGGGTTTTACGCCAGACAGATCCAAGATAC
EST: gi|254349123|gb|GR860395.1|GR860395
EST:     AATTGGCTGACTACATTAATAAAACTTTGAGTAGGGGCCAG                         GTTGTGCCTGGATATGGACATGGGGTTTTACGCCAGACAGATCCAAGATAC
genomic: AATTGGCTGACTACATTAATAAAACTTTGAGTAGGGGCCAGgtaatatcat ... ggatttgcagGTTGTGCCTGGATATGGACATGGGGTTTTACGCCAGACAGATCCAAGATAC
EST: gi|254349122|gb|GR860394.1|GR860394
EST:     AATTGGCTGACTACATTAATAAAACTTTGAGTAGGGGCCAG                         GTTGTGCCTGGATATGGACATGGGGTTTTACGCCAGACAGATCCAAGATAC
genomic: AATTGGCTGACTACATTAATAAAACTTTGAGTAGGGGCCAGgtaatatcat ... ggatttgcagGTTGTGCCTGGATATGGACATGGGGTTTTACGCCAGACAGATCCAAGATAC
EST: gi|17020863|gb|BM091897.1|BM091897
EST:     GTACAGAACAATTGGCTGACTACATTAATAAAACTTTGAGTAGGGGCCAG                         GTTGTGCCTGGATATGGACATGGGGTTTTACGCCAGACAGATCCAAGATAC
genomic: GTACAGAACAATTGGCTGACTACATTAATAAAACTTTGAGTAGGGGCCAGgtaatatcat ... ggatttgcagGTTGTGCCTGGATATGGACATGGGGTTTTACGCCAGACAGATCCAAGATAC
EST: gi|15815591|gb|BI787866.1|BI787866
EST:     GTACAGAACAATTGGCTGACTACATTAATAAAACTTTGAGTAGGGGCCAG                         GTTGTGCCTGGATATGGACATGGGGTTTTACGCCAGACAGATCCAAGATAC
genomic: GTACAGAACAATTGGCTGACTACATTAATAAAACTTTGAGTAGGGGCCAGgtaatatcat ... ggatttgcagGTTGTGCCTGGATATGGACATGGGGTTTTACGCCAGACAGATCCAAGATAC