1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GGGCACCCTTCAAAAAGTTTGCCTCCTTGCGGGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAGgtattttatatatagacactattatttcaccttttgtttcggctgcgttcactgaagccttatttcttggcttttttaatagtggcattcaagattggtctaaatctacttttatgttgaactggagtgattggagttatttgcactatgatctaagtttgttgctcacaatgatgattttcgttgtag
species | Glycine max |
transcript | GLYMA15G11890.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AGCCTCCTTGCGGGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAG GTCCAATTCAATTCTCTGGCCCAGGGATCTGAAGTAATTAAGTCACACTCTEST: gi|21602004|gb|BQ612335.1|BQ612335
genomic: -GCCTCCTTGCGGGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAGgtattttata ... ttcgttgtagGTCCAATTCAATTCTCTGGCCCA-GGATCTGAAGTAATTAA-TCACACTCT
EST: TGCCTCCTTGCGGGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAG GTCCAATTCAATTCTCTGGCCCAGGATCTGAAGTAATTAATCACACTCTACEST: gi|193472285|gb|FK436112.1|FK436112
genomic: TGCCTCCTTGCGGGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAGgtattttata ... ttcgttgtagGTCCAATTCAATTCTCTGGCCCAGGATCTGAAGTAATTAATCACACTCTAC
EST: TGCCTCCTTGCGGGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAG GTCCAATTCAATTCTCTGGCCCAGGATCTGAAGTAATTAATCACACTCTAC
genomic: TGCCTCCTTGCGGGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAGgtattttata ... ttcgttgtagGTCCAATTCAATTCTCTGGCCCAGGATCTGAAGTAATTAATCACACTCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCACCCTTCAAAAAGTTTGCCTCCTTGCGGGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAGgtattttatatatagacactattatttcaccttttgtttcggctgcgttcactgaagccttatttcttggcttttttaatagtggcattcaagattggtctaaatctacttttatgttgaactggagtgattggagttatttgcactatgatctaagtttgttgctcacaatgatgattttcgttgtag
- - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - TGAAGA