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TATAGATGCCTTGGCCAAAATGGTTGATCCTACTTTGAACGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGgtaaaactttgtaatgatgaaatgaacaacagatggctagcaacttgtcttagtaccttttccatttactgcactcacgcatttatttctgcactatact...
species | Glycine max |
transcript | GLYMA15G11820.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: ATTGCCCTCTGTGTTCAG CCGGAACCCGAATTTCGACCTCCGATGTCTGAGGTGGTGCAAGCATTGGTTEST: gi|7686127|gb|AW756775.1|AW756775
genomic: ATTGCCCTCTGTGTTCAGgtaaaacttt ... ttgcgcacagCCGGAACCCGAATTTCGACCTCCGATGTCTGAGGTGGTGCAAGCATTGGTT
EST: CTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAG CCGGAACCCGAATTTCGACCTCCGATGTCTGAGGTGGTGCAAGCATTGGTTEST: gi|51343865|gb|CO984598.1|CO984598
genomic: CTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGgtaaaacttt ... ttgcgcacagCCGGAACCCGAATTTCGACCTCCGATGTCTGAGGTGGTGCAAGCATTGGTT
EST: CTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAG CCGGAACCCGAATTTCGACCTCCGATGTCTGAGGTGGTGCAAGCATTGGTTEST: gi|15664496|gb|BI701867.1|BI701867
genomic: CTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGgtaaaacttt ... ttgcgcacagCCGGAACCCGAATTTCGACCTCCGATGTCTGAGGTGGTGCAAGCATTGGTT
EST: CTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAG CCGGAACCCGAATTTCGACCTCCGATGTCTGAGGTGGTGCAAGCATTGGTT
genomic: CTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGgtaaaacttt ... ttgcgcacagCCGGAACCCGAATTTCGACCTCCGATGTCTGAGGTGGTGCAAGCATTGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATAGATGCCTTGGCCAAAATGGTTGATCCTACTTTGAACGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGgtaaaactttgtaatgatgaaatgaacaacagatggctagcaacttgtcttagtaccttttccatttactgcactcacgcatttatttctgcactatact
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttttcc