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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCAGAATTTGAGTCTGGAAGTTATACGCAGCAAAGTGATGTCTTCAGTTTTGGTGTCGTAATGCTAGAACTTCTCACTGGACGAAAATCTTATGAAAAgtgagtaattccattagtaattaagatagttgtgttcattattccagcaatgatacctaaaccagcttaacagaaaccatgtttaaaatattgaattttgctaaaacaccatacatgatttag

Basic information

species Glycine max
transcript GLYMA15G07520.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07520.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os02g07960.2 (Oryza sativa), 5'ss of exon 15
CTCCAGAATTTGAGTCTGGAAGTTATACGCAGCAAAGTGATGTCTTCAGTTTTGGTGTCGTAATGCTAGAACTTCTCACTGGACGAAAATCTTATGAAAAgtgagtaattccattagtaattaagatagttgtgttcattattccagcaatgatacctaaaccagcttaacagaaaccatgtttaaaatattgaattt---tgctaaaacaccat-acatgatttag
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CTGAAATCCATGAAGCTGGGACTTTTACCTACCGAAGTGATGTTTACAGTTTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAGgtcagtgattcacc--gtaatatgcatttcttaatt--ttagtttcataattgtgt-tagatcaattgtctccaaatgttgtctgaactttctagtttgcttgcttattttccgttacaatatgcag