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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGCCACTGGAGTTGCCCCTAAGAGAGGAATGGTTCTACCTTTTCAACCACTTGCAATGTCTTTTGATAGTGTTAATTATTATGTGGACATGCCTGCTgtaagaaccctatcacttttttccaatataataactttatactaccattcataattaatggtaaatataaaggaagttttaacatttaacag

Basic information

species Glycine max
transcript GLYMA15G02220.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G02220.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G366146_T01 (Zea mays), 5'ss of exon 10
-ATCAGCCACTGGAGTTGCCCCTAAGAGAGGAATGGTTCTACCTTTTCAACCACTTGCAATGTCTTTTGATAGTGTTAATTATTATGTGGACATGCCTGCTgtaagaaccctatcacttttttccaatataataactt------tatactaccattcataat-------taatggtaaatataaaggaagttttaacatttaacag--------
   |||| | || ||  || |     ||||| |||||||| || ||  | || ||||| ||||||||||||| ||| ||||| ||||| ||||||||||| || ||  | |  ||| || ||  ||  |   |  | |      | |  |||| | |  |||       ||  |  ||||||  |    | |  || | |     |        
TGGCAGCAA-TGAAGCCGCTCTGTCAAGAGGCATGGTTCTTCCATTCAACCCTCTTGCCATGTCTTTTGATAATGTGAATTACTATGTCGACATGCCTGCGgtgagttcaccttcaattattctcagcaatttttcctgtcccatttgttaccttcctcaatgtgcttgtatcgtcaaatatggaaactgatggaaaactccgttgtttcccag

upper sequence: GLYMA15G02220.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 14
-ATCAGCCACTGGAGTTGCCCCTAAGAGAGGAATGGTTCTACCTTTTCAACCACTTGCAATGTCTTTTGATAGTGTTAATTATTATGTGGACATGCCTGCTgtaagaaccctatcacttttttccaata-taataactttatactaccattcataattaatggtaaatataaaggaagttttaacatttaacag---------------------
   |||| | || || ||| || |  |||||||||||||| || ||  | || ||||| ||||||||||||| ||| || || ||||| ||||||||||| || ||    |  ||   | ||  ||  | |  |  || |    |  | | | |  || |  ||   | ||  | ||  | |   |  | |  |                     
TGGCAGCAA-TGAAGCTGCTCCAACAAGAGGAATGGTTCTTCCATTCAACCCTCTTGCTATGTCTTTTGATAATGTGAACTACTATGTTGACATGCCTGCGgtgagttgaccttcgagtattctcagcagttgttcctgtcccatttcttaccttcttcaatgtgcttgtacggtaaaatatggaaactgatggggaattctattgtttgcccag